Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq68 100 2e-16 seq8 84.2 2e-11 seq45 82.4 6e-11 >seq68 Length=1664768 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || || | || ||||| ||||| ||| | ||| |||| || Sbjct 547683 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAAGTGGAGTCTTCG 547742 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | || || |||||| ||||| || ||| | || ||| || Sbjct 547743 GACACCATTGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 547802 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || |||| ||| ||||| ||||||||||||| | | || ||||||| |||||| Sbjct 547803 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 547862 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || |||||||| | ||| ||||| Sbjct 547863 ATTCAGAAGGAATCTACCCTCCACTTGGTG 547892 >seq8 Length=5380884 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||| || ||| | ||| || || ||||| || |||| ||| ||||| || |||| Sbjct 1717890 GACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 1717831 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTA 110485 |||| |||||| | || ||||| |||||||||||||| || || | ||| |||| | Sbjct 1717830 GATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGGTCCTG 1717771 Query 110486 AGACTGCGAGGGGGAA 110501 || || |||| |||| Sbjct 1717770 AGGCTCAGAGGTGGAA 1717755 >seq45 Length=2202424 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || ||||| || | |||||||| ||||| ||| | || |||| || Sbjct 1623013 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 1623072 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || | | | | || || ||||| ||||| || ||| | || ||| || Sbjct 1623073 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1623132 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || ||||| | ||| || || ||||| ||||||| | ||| | || ||||||||| Sbjct 1623133 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTCGCTGATTACAAC 1623192 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || || || ||||| | ||| ||||| Sbjct 1623193 ATACAGAAGGAGTCTACCCTCCACCTGGTG 1623222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412782298658498