Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq37 113 3e-20 seq68 104 2e-17 seq22 91.5 1e-13 seq8 91.5 1e-13 >seq37 Length=2664577 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||| || || ||||| || || ||||||||||| || |||| ||||| | Sbjct 1937391 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTATAGTCTGCAAGAGTGCGGCCA 1937332 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | |||| || ||||| || || || || ||||| ||| Sbjct 1937331 TCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTG 1937272 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || ||||| || || Sbjct 1937271 TCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGCTCTCAACCTCAAGGGTGATG 1937212 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || | ||| |||||||| |||||||| Sbjct 1937211 GTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 1937177 >seq68 Length=1664768 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||| | | |||||||| || || || || || || || ||||| || || ||| Sbjct 547225 CCACCCCTGAGCCTCAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCA 547166 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| || || ||||| ||||||||| | || | | ||||||||||| || Sbjct 547165 AGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGGG 547106 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| ||||| || | || ||||| | || | ||||| || || || Sbjct 547105 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACC 547046 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| || | ||| || || || |||||||| Sbjct 547045 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 546999 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||| | || || ||||| || || || ||||| || || |||| |||||| | Sbjct 547669 CGGAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCA 547610 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || |||||||| | || | | ||||| || || ||||||||||| ||| Sbjct 547609 TCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCCTTG 547550 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || ||| | || | ||||| || || || ||||| || || Sbjct 547549 TCCTGGATCTTAGCCTTCACATTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTGATG 547490 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| | ||| || ||||| |||||||| Sbjct 547489 GTCTTGCCAGTGAGGGTCTTGACAAAGATCTGCAT 547455 >seq22 Length=3457718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| || || || | || || || || || || || ||||| ||||| || Sbjct 1876777 TCCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGC 1876718 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || || ||| || || || || |||||| | || | || ||||| ||||| || Sbjct 1876717 CAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGG 1876658 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||||||| || || || ||| || | || ||| | || | ||| | || || | Sbjct 1876657 GATACCCTCCTTATCCTG-AATCTTGGCCTTAACATTGTCGATCGTGCCCGAGCTCTCAA 1876599 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || ||||| || || |||||||| | || || || ||||||||||| Sbjct 1876598 CCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 1876550 >seq8 Length=5380884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 94/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 29574 CAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATC 29633 ||| ||||| ||||| || || |||||||||||||||||||| || | || | ||| Sbjct 1717771 CAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTTCCATC 1717830 Query 29634 ATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTC 29693 || | ||| || |||||| | |||| |||||||| || || ||||| ||||| ||||| Sbjct 1717831 TTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 1717890 Query 29694 TTG 29696 || Sbjct 1717891 CTG 1717893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385163866391826