Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq1065 571 6e-158 seq7681 417 9e-112 seq21 288 1e-72 seq46 271 8e-68 seq9200 174 2e-38 seq581 165 9e-36 >seq1065 Length=3091 Score = 571 bits (632), Expect = 6e-158 Identities = 738/1013 (73%), Gaps = 6/1013 (1%) Strand=Plus/Minus Query 158775 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 158834 ||||| || | ||||||||| | | | || |||||||||||||| || |||||||| Sbjct 2440 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGC 2381 Query 158835 CTTCTTCTTCTACCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGCACGACTTTC 158894 || | || | || ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 2380 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2321 Query 158895 GCTACGAGCTGGTATACACATGGACTCGCTACTTCCTATCTTGAGGG-TGCAAACTTTCT 158953 | || |||||||| |||||| | |||| ||||||| | || || ||||| ||||| Sbjct 2320 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAA--TTTCT 2263 Query 158954 TA-CAGCAGCAGTTTCGACTCCAGCTGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGG 159012 || | || || ||||| || || ||| || | | | || ||| | |||| || |||| Sbjct 2262 TAACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGG 2203 Query 159013 GTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGGTCCAACTTGGGGGACTCTGGAATTTTG 159072 | || || || ||||||||||| | ||| ||| | || || || |||| ||||| Sbjct 2202 GACCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTG 2143 Query 159073 TGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTCATGCTTCGCCAGTTTGAACTGGCAC 159132 | || ||||| || || ||||| ||||| ||||||||| | || || |||||||| || | Sbjct 2142 TCGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTC 2083 Query 159133 G-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTT 159191 | ||| || | | | || || ||||| ||| | ||||||||||| || || |||||| Sbjct 2082 GGTCTGTTCAAT-TGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTT 2024 Query 159192 GTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTT 159251 || ||| |||||||| || ||||| || || || ||||||| || || ||| ||| Sbjct 2023 GTTTCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTT 1964 Query 159252 GGGGTGGCCGCAATATTCAGGTTCCTACTCTTCCTACAAGGGTTCCACAATTGGACACTA 159311 || || || || ||||| | ||| | || ||| | ||||| || || |||||||| | Sbjct 1963 GGCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTG 1904 Query 159312 AACCCCTTCCATATGATGGGAGTTGCTGGTATCCTAGGTGGAGCACTTCTATCTGCTATT 159371 |||||||| ||||||||||||||||| || | |||| | || || |||| |||||| Sbjct 1903 AACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATT 1844 Query 159372 CATGGGGTCACAGTTGAAAATACATTATACGAGGATGGAGAACAAGCAAACACCTTTAAG 159431 ||||||| || || ||||| || ||| ||| ||||| || || || ||||| Sbjct 1843 CATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGA 1784 Query 159432 GCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGG 159491 || ||| | ||||||||| ||| || |||||||| ||||| ||||| |||||||| ||| Sbjct 1783 GCTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGG 1724 Query 159492 TCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGTGGCTTCATTTCTTTATGTTGTTT 159551 || || ||||| || |||| ||||| || || || ||| | |||||||||||| | ||| Sbjct 1723 TCCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTT 1664 Query 159552 GTGCCTGTTATGGGTCTATGGACATCCAGTATTGGCATTATTGGTCTTGCTCTCAATCTT 159611 || || || | ||| |||||| ||||||| | |||| || ||||| || || Sbjct 1663 GTACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTA 1604 Query 159612 CGTGCTTACGATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCAGAATTTGAAACG 159671 ||||| || || ||||| || || ||| | ||||| |||||||| |||||||| || Sbjct 1603 CGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACT 1544 Query 159672 TTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTGGCACCTGCTGAT 159731 ||||||||||| || || ||| | || || || | ||||| ||| ||||| || ||| Sbjct 1543 TTCTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGAT 1484 Query 159732 CAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGTAACGC 159784 || || |||||||| | || ||||| || || ||||||||| | || ||||| Sbjct 1483 CAGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 1431 >seq7681 Length=829 Score = 417 bits (462), Expect = 9e-112 Identities = 462/613 (75%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 157426 TGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTAT 157485 ||||| |||||| || || || || || || ||||| | ||| || ||| | | || Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 157486 CCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAAC 157545 ||| | |||||||| |||||| |||| ||||||| | || |||||||||||||| ||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 157546 TATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGC 157605 | |||| | || ||||||||||||||||| || ||||||||||| || |||||| | || Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 157606 GTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCACGGAAGTCTCGTTACTTCC 157665 || ||||| |||||||| || || | ||| ||||||||| || | || || || Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC- 240 Query 157666 TCGCTTGTTC-GTGAAACAACTGAAACAGAGTCACAGAACTATGGTTACAAGTTCGGTCA 157724 | | ||| || | ||||| ||||||| || || || | |||||||| || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 157725 AGAAGAAGAGACGTACAACATCGTTGCTGCACACGGTTACTTCGGTCGCCTGATCTTCCA 157784 ||| |||||||| || ||||| || ||||| |||||||| || ||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 157785 ATACGCTTCATTCAACAACAGCAGAAGTCTTCACTTCTTCCTCGCCGCATGGCCTGTTGT 157844 ||| ||| ||||||||| | | | ||||||||| | || || |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 157845 CGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAA 157904 || |||||||||||||| | || | || || |||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 157905 CTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTCCT 157964 |||||||| || | ||||| | || ||||| || | || || ||||| ||| || | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 157965 GAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACT 158024 ||||| ||| ||||||||||||||| ||||| || ||||| || ||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 158025 GGATCTTGCTGCT 158037 || | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 288 bits (318), Expect = 1e-72 Identities = 423/596 (71%), Gaps = 2/596 (0%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | | | ||||| ||||| || || | || | | ||||| ||||| | Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| || || || | | |||||| | || ||| | || ||| | ||||| ||| Sbjct 2753460 ATGATCCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCTCCT 2753519 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || ||||| || |||||||| || || ||| ||||||| | || ||||| ||||| Sbjct 2753520 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAAT 2753579 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 || ||||||||||| || |||||| ||| || ||| | | || || ||||| | Sbjct 2753580 ATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTT 2753639 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCAACTGGTAGTC 157350 || ||||| |||| ||||||| ||| | ||||| |||||||||| | || | || Sbjct 2753640 TGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTT 2753699 Query 157351 TTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGT 157410 | |||||| | | || | | |||||||| ||||| ||||||||| || || Sbjct 2753700 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGT 2753759 Query 157411 TTAGGTATGCGCCCCTGGATCTGTGTTGCCTACTCGGCACCAGTCGCTGCTGCGAGTGCA 157470 || |||||||| || ||||| ||||||||| || | || || || ||||| | || Sbjct 2753760 TTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGCT 2753819 Query 157471 GTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATC 157530 | ||| | |||| ||| |||||||| ||| || ||| |||| || | || ||| Sbjct 2753820 ATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATC 2753879 Query 157531 TCTGGTACTTTTAACTATATGCTCGTCTTCCAGGCAGAGCACAATATTCTTATGCATCCG 157590 ||||||||||| |||| |||| | || ||||||||| ||||||| || |||| |||||| Sbjct 2753880 TCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCA 2753939 Query 157591 TTCCACATGCTCGGCGTTGCTGGGGTATTCGGTGGATCTTTGTTCTCTGCTATGCA 157646 || ||||| | || || ||||| |||||||| || || | ||| ||||||||| Sbjct 2753940 TTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCA 2753994 >seq46 Length=2187656 Score = 271 bits (300), Expect = 8e-68 Identities = 354/486 (73%), Gaps = 3/486 (1%) Strand=Plus/Minus Query 157144 TTCATTGTTGCATTCGTAGCAGCACCTCCCGTTGATATCGACGGTATTCGCGAACCAGTT 157203 || ||| | || ||| | ||||| | ||| | ||||| || ||||||||| | || || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 157204 GCTGGTTCTCTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCAAAC 157263 ||||||| | | ||||| ||||| || |||||||||| || |||| ||| Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 157264 GCAATCGGTCTTCACTTCTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTAC 157323 || ||||| | || || ||||| || |||||||| ||||| |||||||| ||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 157324 AACGGTGGTCCTTTCCAACTGGTAGTCTTTCACTTCCTGATCG-GCATCTATGCCTATAT 157382 || |||||||||| | || | || | || ||| | | | | | || || ||||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TGT-TATAT 1370595 Query 157383 GGGACGTGAGTGGGAACTTTCTTACCGTTTAGGTATGCGCCCCTGGATCTGTGTTGCCTA 157442 ||| ||||||||||||||| || | || | ||||||| || ||||| |||||| || Sbjct 1370594 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 1370535 Query 157443 CTCGGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTC 157502 || || || || || ||||| | ||| || ||| | | || || |||||||||| Sbjct 1370534 TTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAG 1370475 Query 157503 TTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGCTCGTCTTCCA 157562 |||||| |||| |||| || | || |||||||||||||| |||| |||| | || ||| | Sbjct 1370474 TTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 1370415 Query 157563 GGCAGAGCACAATATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGGGTATTCGG 157622 || ||||||||| || ||||||||||| || |||||| | || || ||||| ||| || Sbjct 1370414 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGG 1370355 Query 157623 TGGATC 157628 || ||| Sbjct 1370354 TGCATC 1370349 >seq9200 Length=658 Score = 174 bits (192), Expect = 2e-38 Identities = 210/286 (73%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | ||| ||||| |||| | || ||| | || | || ||||| ||||| | Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTGCTTCATTGTTGCATTCGTAGCAGCACCT 157170 ||||| || || || | | |||||| | || ||| | || ||| | ||||| ||| Sbjct 413 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCT 472 Query 157171 CCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACAAC 157230 || || ||||| || |||||||| || || ||| |||||||| | | ||||| ||||| Sbjct 473 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 532 Query 157231 ATCATCTCTGGTGCAGTTGTTCCTTCTTCAAACGCAATCGGTCTTCACTTCTACCCCATC 157290 || ||||||||||| || ||||| |||| || ||||| | || || ||||| || Sbjct 533 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATT 592 Query 157291 TGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTT 157336 |||||||| ||||| ||||||| ||| | ||||| |||||||||| Sbjct 593 TGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 165 bits (182), Expect = 9e-36 Identities = 255/361 (71%), Gaps = 15/361 (4%) Strand=Plus/Plus Query 157051 TTCTGCGAGTGGGTAACTTCCACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTGCTT 157110 |||||| | ||| ||||| |||| | |||||| | || | || ||||||||||| | Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 157111 ATGATTCCAACATTGCTTGCAGCAACTATCTG-CTTCATTGTTGCATTCGTAGCAGCACC 157169 ||||| || || || | | |||||| |||| || ||| | || ||| | || || || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 157170 TCCCGTTGATATCGACGGTATTCGCGAACCAGTTGCTGGTTCTCTCATGTATGGCAACA- 157228 ||| || ||||| || |||||||| || || ||| |||||||| | | ||||| |||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 157229 ----ACATCATCTCTGGTGCAGTTGTT----CCTTCTTCAAACGCAATCGGTCTTCACTT 157280 | || ||||||||||| || || ||| |||| || ||||| | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 157281 CTACCCCATCTGGGAAGCAGCATCACTTGATGAGTGGCTTTACAACGGTGGTCCTTTCCA 157340 |||| ||||||||| ||||| ||||||||||| | ||||| || ||||||| | Sbjct 5552 TTACC----CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 157341 ACTGGTAGTCTTTCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 157400 || | || | |||||| | | || | | |||||||| |||||||||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Query 157401 T 157401 | Sbjct 5668 T 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545193267566880