Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq48 107 1e-17 seq38 107 1e-17 seq53 105 5e-17 seq10 105 5e-17 seq128 100 2e-15 seq47 98.7 7e-15 seq18 96.9 3e-14 seq9 95.1 9e-14 seq40 91.5 1e-12 >seq48 Length=2155392 Score = 107 bits (118), Expect = 1e-17 Identities = 138/189 (73%), Gaps = 6/189 (3%) Strand=Plus/Minus Query 282274 AACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT 282333 |||||| ||| || || |||| |||||||| || | | | ||| || | || | Sbjct 164450 AACATCGAAGGTACCGCCTCCCAAATCAAAAACTAGGATAGT---TTCATTATTTT---T 164397 Query 282334 TTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATT 282393 || |||| |||||| || | | ||||||||||||||||| ||||| | | ||| | Sbjct 164396 CTTCTCAAAACCATAGGCCAGTGATGCAGCAGTTGGTTCATTTATAATACGGAGAACCTC 164337 Query 282394 AAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 282453 ||| || ||||| | || |||||||| || ||| |||||| |||||||| |||||||| Sbjct 164336 AAGTCCCGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGCGAATCGTTGAAATATGC 164277 Query 282454 AGGAACAGT 282462 ||||| || Sbjct 164276 TGGAACTGT 164268 >seq38 Length=2547764 Score = 107 bits (118), Expect = 1e-17 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || || |||||||| |||| ||||||||||||||| ||||| || || | | ||| Sbjct 1910865 TTCTTGTCGAGACCATAGGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGGAGCACA 1910806 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| ||| ||||| || ||||| || || || || || || || || Sbjct 1910805 TTGAGACCAGCAATCACTCCAGCATCCTTGGTGGCCTGCCTCTGCGAGTCATTGAAGTAG 1910746 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| || | ||| |||| Sbjct 1910745 GCAGGAACTGTGACAACAGCAT 1910724 >seq53 Length=1972613 Score = 105 bits (116), Expect = 5e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||||||||| || |||| ||||||||| Sbjct 39688 CCATAAGACAGAGCAGCTGCCGTTGGTTCATTAATAATCCTTTCCACATCGAGACCAGCA 39747 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | ||||||||||| ||||| || | || | ||| || |||||||| ||||||||| Sbjct 39748 ATGCGGCCTGCATCTTTTGTGGCCTGACGCTGCGCATCATTGAAATATGCTGGAACAGTA 39807 Query 282464 ATAACGGC 282471 || || || Sbjct 39808 ATCACAGC 39815 >seq10 Length=5007788 Score = 105 bits (116), Expect = 5e-17 Identities = 146/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| ||||| |||| ||||| | || | | |||| || | || | Sbjct 3219486 ACATCAAAGGTACCACCTCCCAAGTCAAACACTAGGA---TTGTTTCATTATTTT---TC 3219433 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || |||| ||||| || || | |||||||||||||| || ||||| | | ||| | Sbjct 3219432 TTCTCAAAGCCATAAGCCAATGATGCAGCAGTTGGTTCGTTTATAATACGAAGAACCTCC 3219373 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || |||||||| || ||| |||||||||||| || |||||||| Sbjct 3219372 AGTCCTGCAATACGGCCAGCATCTTTTGTTGCTGTTCTTTGTGAATCATTGAAATATGCT 3219313 Query 282455 GGAACAGTAATAACGGCATCTGT 282477 ||||| |||| ||| || | ||| Sbjct 3219312 GGAACTGTAACAACTGCTTTTGT 3219290 >seq128 Length=654355 Score = 100 bits (110), Expect = 2e-15 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| |||| |||||||||||| || ||||| || || | | ||| Sbjct 502539 TTCTTGTCAAGACCATAGGCAATAGCAGCAGCAGTGGGCTCATTGATGATACGGAGGACA 502480 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || ||||||||||| || ||||| || ||||| || || || || || || || || Sbjct 502479 TTCAGACCAGCAATCACACCCGCATCCTTGGTGGCCTGCCTCTGAGAGTCATTGAAGTAG 502420 Query 282452 GCAGGAACAGTAATAACGGC 282471 |||||||| || | ||| || Sbjct 502419 GCAGGAACTGTGACAACAGC 502400 >seq47 Length=2158321 Score = 98.7 bits (108), Expect = 7e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | |||||| || ||||||||||| || ||||| ||||| || |||||| Sbjct 1954987 CCATAAGACAGAGCAGCTGCTGTTGGTTCATTGATGATTCTTTCAACATCGAGGCCAGCA 1955046 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | |||||||| || |||||||| | ||| ||| || ||||| || ||||||||| Sbjct 1955047 ATCCGACCTGCATCCTTTGTGGCTTGACGCGGTGCATCATTGAAATAAGCTGGAACAGTA 1955106 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAG 282497 || || || | || || ||| |||| |||| Sbjct 1955107 ATCACAGCCTTTGAAACAGATTTGCCAAGGTAAG 1955140 >seq18 Length=3692672 Score = 96.9 bits (106), Expect = 3e-14 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||| |||||||| || ||||| ||||| |||| || | ||| |||||| Sbjct 768293 CCATAGGACAGAGCTGCAGCAGTGGGCTCATTGATAATCCTCATCACCTCAAGCCCAGCA 768234 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||||| || ||||| || || || || | || | ||| || ||||| ||||| |||||| Sbjct 768233 ATTCTACCAGCATCCTTTGTAGCCTGACGCTGAGCATCATTGAAATAAGCAGGGACAGTA 768174 Query 282464 ATAACGGC 282471 ||||| || Sbjct 768173 ATAACAGC 768166 >seq9 Length=5113091 Score = 95.1 bits (104), Expect = 9e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 || || ||||||||||| |||| ||||||||||| |||||||| || || | || ||| Sbjct 3116117 TTCTTGTCAAGACCATAGGCAATGGCAGCAGCAGTGGGTTCATTGATTATACGCATCACA 3116176 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || || ||||| || || || || ||||| || || || || ||||| ||||| Sbjct 3116177 TTGAGGCCGGCAATGACACCAGCGTCCTTGGTGGCCTGCCTCTGCGAGTCGTTGAAATAG 3116236 Query 282452 GCAGGAACAGTAATAACGGC 282471 ||||| || || | ||||| Sbjct 3116237 GCAGGCACTGTTACCACGGC 3116256 >seq40 Length=2521541 Score = 91.5 bits (100), Expect = 1e-12 Identities = 298/460 (65%), Gaps = 10/460 (2%) Strand=Plus/Minus Query 282020 TCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCA 282079 || || || ||||||| || || | ||||| || || |||| | || || |||| Sbjct 2081168 TCGATGCCCTCGAACAGGGAGTCGATCTCAATGGTTGTCTGAGCAGTTGACGACAGTGTG 2081109 Query 282080 CGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCA 282137 || || ||||| ||||| || || | || || || | || || | ||| | | | Sbjct 2081108 CGCTTGGCACGCTCACAGGCAGTGCGCAGCCTGCGAAGAGCGCGTG--GGTTGCCACTGA 2081051 Query 282138 AATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAA 282197 || | || | || | |||||| |||| ||| | | || ||||| || || | Sbjct 2081050 TGTCCTTCTTGTGCTTGCGCTTGAATTCTTGAACGAAGTGGTTCACCAGACGGTTGTCGA 2080991 Query 282198 AATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTT 282257 | || |||||||| | | ||| | || | || || | || | ||| | || || | Sbjct 2080990 AGTCCTCACCTCCAAGGTGAGTGTCACCAGCAGTGGCCTTCACCTCGAAGATGCCCTCCT 2080931 Query 282258 CAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCA 282317 ||| | | || | ||||| || |||||||| | ||||| || || || ||| Sbjct 2080930 CAATGGTGAGCAGCGACACATCGAACGTGCCACCACCAAGGTCAAAGATGAGCACGTTCT 2080871 Query 282318 TTTCTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTT 282371 | || | ||| || || ||||||||||| |||| || ||||| || || | Sbjct 2080870 TCTCACCCGCGCTGCTGGCCTTCTTGTCAAGACCATAGGCAATGGCGGCAGCCGTGGGCT 2080811 Query 282372 CATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTC 282431 | || || || | ||| ||||| || |||||||| || ||||| || ||||| || | Sbjct 2080810 CGTTGATGATGCGCAACACATTGAGGCCAGCAATGACACCGGCATCCTTGGTGGCCTGCC 2080751 Query 282432 TTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 282471 | || || || ||||| || || || || || | |||||| Sbjct 2080750 TCTGCGAGTCATTAAAGTAGGCCGGCACTGTCACAACGGC 2080711 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740051757207636