Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq22 131 3e-25 seq45 120 6e-22 seq8 118 2e-21 seq37 111 3e-19 seq68 100 6e-16 seq69 95.1 2e-14 seq4152 91.5 3e-13 >seq22 Length=3457718 Score = 131 bits (144), Expect = 3e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 82593 AAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTA 82652 || ||||| || | || ||||| ||||| ||||| || || ||||| | | | | Sbjct 1877645 AAGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTACGC 1877586 Query 82653 CCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCC 82712 || || || || || || || |||||||| || || || ||||||||||| ||||||||| Sbjct 1877585 CCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCTTCC 1877526 Query 82713 TTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTACTTCCAAAGT 82771 || || || ||||| || || ||||| ||||| || || || | || || || | || Sbjct 1877525 TTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCCG-AGCTCTCCACCTCTAGCGT 1877467 Query 82772 TATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||| |||| ||||| ||||| |||||||| Sbjct 1877466 GATCGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 1877428 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | ||||| || | ||| |||||||| || ||||| || || | || | Sbjct 1877006 TACCACCCCTAAGGCGCAGCACAAGGTGGAGAGTAGACTCCTTCTGGATGTTGTCGTCCG 1876947 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | || || || || || || ||||||||||| || || || || ||||| | Sbjct 1876946 CCAGTGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGGTCTGGGG 1876887 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || |||||||| || ||||| ||||| || || ||| | Sbjct 1876886 GGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCGGAGCTTTCAA 1876827 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||| || || |||||||| || | ||||||||||| || |||||| Sbjct 1876826 CCTCCAACGTGATTGTCTTGCCAGTAAGGGTCTTTACAAAAATTTGCATT 1876777 Score = 125 bits (138), Expect = 1e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| || || || | ||| ||||| || || ||||| || || ||||||| Sbjct 1876776 CCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCAGCC 1876717 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || |||||||| || || |||||||| || || || || || || || || Sbjct 1876716 AATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGGGGG 1876657 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || |||||||| |||||||| || || ||||| || ||||| | || | || || Sbjct 1876656 ATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCGATCGTGCCCG-AGCTCTCAAC 1876598 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || |||||||| |||| ||||| || ||||||||||| Sbjct 1876597 CTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 1876550 Score = 125 bits (138), Expect = 1e-23 Identities = 165/228 (72%), Gaps = 13/228 (6%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||||| || | ||| |||||||| || ||||| ||||| ||||||| Sbjct 1877426 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAG-- 1877369 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || || || ||||| || ||||||||||| |||| || || ||| | || Sbjct 1877368 ---------CCATCCTCAAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTAGTGGG 1877318 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGT-TCTAC 82762 || || ||||| || || |||||||| || ||||| || || || || | || | || || Sbjct 1877317 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTC-TGAGCTCTCAAC 1877259 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || | ||| || ||||| || || | ||||| ||||| |||||||| Sbjct 1877258 CTCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 1877211 >seq45 Length=2202424 Score = 120 bits (132), Expect = 6e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| || || | ||| || || || || ||||| || || || |||| Sbjct 1622557 TACCACCCCTCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1622498 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||| || || || || || ||||||||||| || || || || || || | Sbjct 1622497 CGAGGGTACGACCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGG 1622438 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| || || ||||| || || || || ||||| || ||| || || | Sbjct 1622437 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCAATTGTGTCAGAAGACTCCA 1622378 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | || || |||||||| || | ||||| ||||| |||||||| Sbjct 1622377 CCTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 1622329 >seq8 Length=5380884 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | ||| || || || || ||||| || || || |||| || | | || Sbjct 978718 CGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCA 978777 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || ||||||||||| || | || || || || || || || ||||| Sbjct 978778 TCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 978837 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || |||||||| || || || |||||||| ||| | || || |||||||| || Sbjct 978838 TCCTGGATCTTTGCCTTCACGTTGTCAATCGTGTCAGATGACTCAACCTCCAAAGTGATG 978897 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | ||||| ||||| |||||||| Sbjct 978898 GTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 978932 >seq37 Length=2664577 Score = 111 bits (122), Expect = 3e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || || | || || || | ||| || || || || ||||| || || || |||| Sbjct 1937177 TACCACCCCTGAGGCGGAGGACAAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 1937118 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 || | | ||||| || || || || ||||||||||| || || || || || || | Sbjct 1937117 CAAGGGTGCGCCCGTCCTCAAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGG 1937058 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| || || ||||| || || || || || || || ||| || || | Sbjct 1937057 GGATACCTTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCA 1936998 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| || | ||||| || || |||||||| Sbjct 1936997 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 1936949 >seq68 Length=1664768 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | ||| || || || || ||||| || || || |||| || | | ||||| Sbjct 547211 CAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTC 547152 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || ||||| || ||||||||||| || | || ||||| || || || || ||||| || Sbjct 547151 CTCCAGTTGCTTGCCAGCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTC 547092 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || ||||| || || || || ||||| || || | || || || | || || || Sbjct 547091 CTGGATCTTGGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGT 547032 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || | ||||| || || |||||||| Sbjct 547031 CTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 546999 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || | ||| ||||| || || ||||| || || || |||| || ||| || || Sbjct 547439 CAGGACGAGGTGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTTCGGCCATC 547380 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 || || || || ||||||||||| || | || || || || || || || ||||| || Sbjct 547379 CTCAAGCTGCTTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 547320 Query 82718 TTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGT 82777 || ||||| || || || || || || || || | || || || | || || || Sbjct 547319 CTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTGATGGT 547260 Query 82778 CTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||| || | ||||| || || |||||||| Sbjct 547259 CTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 547227 >seq69 Length=1663458 Score = 95.1 bits (104), Expect = 2e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 82598 CAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTC 82657 ||| || ||||| || || || |||||||| || || ||||||| || |||| || || Sbjct 149400 CAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGCTAACGTTCTCCCATC 149459 Query 82658 TTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATC 82717 ||| | ||| || ||||||||||| || ||||| || ||||| || || || ||||| || Sbjct 149460 TTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 149519 Query 82718 TTGAA 82722 |||| Sbjct 149520 CTGAA 149524 >seq4152 Length=1438 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || | |||||| || || || ||||| || || || || | || | | ||| Sbjct 350 CGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCG 409 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | || || || || || || || ||||| Sbjct 410 TCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTG 469 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || || ||||| || || || || || || || || | || || |||| || ||| Sbjct 470 TCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATC 529 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 530 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 564 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981678936115454