Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq71 89.7 1e-12 seq63 87.8 4e-12 >seq71 Length=1586662 Score = 89.7 bits (98), Expect = 1e-12 Identities = 132/185 (71%), Gaps = 4/185 (2%) Strand=Plus/Minus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 || ||| | |||||| ||||| ||||| ||||| |||||||| || || |||||| Sbjct 1114082 AGGCATCTCAATGACGGTGATTTTGTTCTTTTCAACCGGCAACCAAGTCTTCACAAAATG 1114023 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAA 305423 ||||| |||| ||| | |||| ||||| || | || || || || ||| | Sbjct 1114022 TCTATTATGGGGCATCGAATCAAG--ATTATGCCTTACTCAACTTTCCGGTTGAATTTGT 1113965 Query 305424 GTGCTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTC 305483 || | | || || ||||| |||||||| || |||||||||||||||||||| || | Sbjct 1113964 CTGTCACTTCCCCATACAATGCTGATTTTGACGGGGATGAAATGAATATGCATGTCCCCC 1113905 Query 305484 AATCA 305488 | ||| Sbjct 1113904 AGTCA 1113900 >seq63 Length=1736770 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/209 (70%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 304926 CTGGAATTATGCAGGCATCTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCA 304985 ||||||| || ||||| ||||| | || || || ||| | || ||| | || | Sbjct 1021925 CTGGAAT-ATTCAGGCGACTCAACGCTCAGGAAGGCCTATTAAATCAATTTGCCACAGAC 1021983 Query 304986 TTAAAGGTAAAGAGGGTCGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTG 305045 |||| | ||||| || | |||| |||| || | ||||| || ||||||||||| | Sbjct 1021984 TTAAGGCAAAAGAAGGCCTTATTAGAGGGAACTTGATGGGCAAGCGTGTTGATTTCTCAG 1022043 Query 305046 CAAGAAGTGTAATCACACCTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTG 305105 | ||| || |||||||| ||| | | |||| || ||||||| ||||| || || | Sbjct 1022044 CCCGAACGGTTATCACACCAGATCCAAATATTAACATTGATGAATTGGGAGTACC-ATGG 1022102 Query 305106 A-AATTGCTTTAAAACTAACATTTCCAGA 305133 | |||||||| || || |||| |||||| Sbjct 1022103 AGTATTGCTTTGAACCTGACATATCCAGA 1022131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186633581624346