Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq45 93.3 3e-14 seq4152 89.7 3e-13 seq68 87.8 1e-12 seq8 86.0 4e-12 seq5 86.0 4e-12 >seq45 Length=2202424 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| || | ||| | ||| | || || ||| ||| || || |||||||| |||| Sbjct 1622784 ACCACCCCTGAGACGGAGCACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 1622725 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| |||| || || || || || || | ||||||||| || | || Sbjct 1622724 GAGGGTACGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGG 1622665 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || || || | | | ||| | ||||| |||||||| Sbjct 1622664 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATTGTGTCAGATGATTCCA 1622606 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || ||||| || | || || ||||||||||||||| Sbjct 1622605 CCTCAAGGGTGATGGTCTTACCGGTGAGGGTCTTGACAAAGATCTGCATA 1622556 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| || | ||| | ||||| || || || ||| || |||||||||||||| | | Sbjct 1623239 CCACCCCTGAGACGGAGCACCAGGTGGAGGGTAGACTCCTTCTGTATGTTGTAATCAGCG 1623180 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 |||||||| | || || | || || |||||||| || | | |||||| || | || Sbjct 1623179 AGTGTGCGCCCATCCTCAAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGG 1623120 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | |||||| || ||||| Sbjct 1623119 ATGCCCTCCTTGTCCTGGATCTT-AGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCAC 1623061 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || || || |||||||||||| Sbjct 1623060 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAGATCTGCATA 1623012 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | || | ||| | ||| || ||| ||| || || |||||||| || | Sbjct 1623468 ACCACCACGGAGGCGGAGCACAAGATGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGC 1623409 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| ||||| | || |||| || || || ||||| || | ||||||||| || | || Sbjct 1623408 GAGAGTGCGGCCATCCTCCAGCTGCTTCCCTGCAAAGATGAGACGCTGCTGGTCCGGGGG 1623349 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCA 33700 | |||||| ||||| || || |||| ||| |||| |||||| || | Sbjct 1623348 GATACCTTCCTTGTCCTGGATCTTGGCCTTCA-CATTGTCAATAGTGTCGGAGCTCTCAA 1623290 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | ||||| || || || || || || || |||||||||||||| Sbjct 1623289 CCTCCAGTGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1623241 >seq4152 Length=1438 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 355 CACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTC 414 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || ||||| || |||| |||||||| || |||| | || || ||||| Sbjct 415 CAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 474 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | ||| | |||||| || ||||| || | ||||||||| | Sbjct 475 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCT 533 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 534 TGCCCGTCAGGGTCTTCACGAAGATCTGCAT 564 >seq68 Length=1664768 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | | ||| | |||||| || || || || || || |||||||| || | Sbjct 547909 CCACCACGGAGACGAAGCACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGCC 547850 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || |||||||||| ||||||||| || | || Sbjct 547849 AGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGG 547790 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACGGTGTCGCTTGATTCCACG 33702 | || || ||||| || ||| |||| || | |||||| || ||||| Sbjct 547789 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACT 547730 Query 33703 TCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | ||||| || || || || | ||| || ||||||||||||||| Sbjct 547729 TCTAAGGTGATGGTCTTGCCAGTAAGCGTCTTCACAAAGATCTGCATA 547682 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| || | || ||||| | || || | || Sbjct 547657 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCATCCTCAAGCTGC 547598 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||| ||| | || | ||| || ||||| || || Sbjct 547597 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGAGGAATACCCTCCTTGTCCTGGATCTTA 547538 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| | |||||| || ||||| |||| |||||| || || || || Sbjct 547537 GCCTTCA-CATTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTGATGGTCTTGCCAGT 547479 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || |||||||||||||| Sbjct 547478 GAGGGTCTTGACAAAGATCTGCAT 547455 >seq8 Length=5380884 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| ||| || || |||||||| |||| ||| ||||| | || || | || Sbjct 979186 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCATCCTCAAGCTGC 979245 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || || || || | ||||||||| ||| | || | || || ||||| ||||| Sbjct 979246 TTGCCAGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCCTGGATTTTG 979305 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 |||| ||| ||| | |||||| ||| || || |||| |||||| || || || || Sbjct 979306 GCCTTCA-CATTGTCGATGGTGTCAGATGACTCGACCTCAAGCGTGATGGTCTTTCCCGT 979364 Query 33726 TAACGTTTTTACAAAGATCTGCAT 33749 | || || || ||||||||||| Sbjct 979365 GAGGGTCTTCACGAAGATCTGCAT 979388 >seq5 Length=5768508 Score = 86.0 bits (94), Expect = 4e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || ||| ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 1511093 CACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTC 1511034 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 | || |||||||| || || | |||||||| || |||| | || || ||||| Sbjct 1511033 GAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTG 1510974 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || |||| | | ||| | |||||| || ||||| || | |||||| || | Sbjct 1510973 GATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAACGTGATGGTCT 1510915 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || | || || || ||||||||||| Sbjct 1510914 TCCCCGTCAGGGTCTTCACGAAGATCTGCAT 1510884 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328656784341120