Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq22 107 5e-18 seq45 102 2e-16 seq8 102 2e-16 seq37 98.7 2e-15 seq5 98.7 2e-15 seq4152 93.3 1e-13 seq69 91.5 3e-13 >seq22 Length=3457718 Score = 107 bits (118), Expect = 5e-18 Identities = 145/201 (72%), Gaps = 1/201 (0%) Strand=Plus/Plus Query 206179 TTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGT 206237 ||||| ||| || || || || || || ||||| ||||| || ||||| || |||||| | Sbjct 1876786 TTTTGTAAAGACCCTTACTGGCAAGACAATCACGTTGGAGGTTGAAAGCTCCGACACAAT 1876845 Query 206238 CGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACT 206297 || || ||| |||||| || || || || || || || ||| || || || Sbjct 1876846 TGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGCT 1876905 Query 206298 TATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAA 206357 ||||| || || |||||| | || ||||| | || |||| || ||||| ||||||| Sbjct 1876906 CATCTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACACTGGCGGACGACAACATCCAGAA 1876965 Query 206358 AGAGTCTACTCTTCACCTTGT 206378 ||||||||||| |||||||| Sbjct 1876966 GGAGTCTACTCTCCACCTTGT 1876986 Score = 84.2 bits (92), Expect = 5e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 206263 GAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAA 206322 || ||||| || || |||||| || || || |||||||| ||||||||| | ||| Sbjct 1877076 GACAAAGAGGGCATCCCCCCGGACCAGCAGAGGCTCATCTTCGCTGGAAAGCAGCTTGAA 1877135 Query 206323 GATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || | | || |||| || |||||| ||||||| |||||||| ||||||||||| Sbjct 1877136 GACAGCCGCACACTGGCAGACTACAACATCCAGAAGGAGTCTACCCTTCACCTTGT 1877191 Score = 84.2 bits (92), Expect = 5e-11 Identities = 141/206 (68%), Gaps = 11/206 (5%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || ||||| ||||| || || ||| | || || || || || ||| Sbjct 1877214 CAGATCTTTGTGAAGACTCTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCAGAC 1877273 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| |||| || ||| |||||| || || || || || || | ||| || Sbjct 1877274 ACAATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCACTAGACCAGCAG 1877333 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 |||| ||||| || || ||||| | || ||||| | |||||||| || Sbjct 1877334 CGACTCATCTTTGCTGGGAAGCAACTTGAGGATGG-----------CTGATTACAATATC 1877382 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| |||||||||||||||||||| Sbjct 1877383 CAGAAGGAGTCTACTCTTCACCTTGT 1877408 >seq45 Length=2202424 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || ||||| || || || ||||| | || || || ||||||| Sbjct 1622788 CAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTTGAGTCTTCTGAC 1622847 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || || || |||||| ||| Sbjct 1622848 ACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAA 1622907 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||| ||||| | || | ||||| |||||| || Sbjct 1622908 CGTCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGGCGTACCCTCGCCGACTACAACATC 1622967 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 1622968 CAGAAGGAGTCCACCCTCCACCTGGT 1622993 >seq8 Length=5380884 Score = 102 bits (112), Expect = 2e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || ||||| || || || ||||||||||| || || |||||| Sbjct 978929 CAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGTCATCTGAC 978870 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| |||||| || || || || || || ||||||| || Sbjct 978869 ACGATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAG 978810 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| || || |||||| |||| ||||| | || | || || |||||| || Sbjct 978809 CGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCTGACTACAACATC 978750 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| || || ||||| || Sbjct 978749 CAGAAGGAGTCCACCCTCCACCTGGT 978724 >seq37 Length=2664577 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| ||||||||| |||| Sbjct 1936964 AAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCTGACACCATCGACAAC 1937023 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || |||||| || || || ||||| Sbjct 1937024 GTCAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCAGCAGAGGCTGATCTTT 1937083 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| | || || || | || | || || |||||| ||||||| ||||| Sbjct 1937084 GCTGGCAAGCAGCTTGAGGACGGGCGCACCCTTGCTGACTACAACATCCAGAAGGAGTCC 1937143 Query 206365 ACTCTTCACCTTGT 206378 || ||||||||||| Sbjct 1937144 ACCCTTCACCTTGT 1937157 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| |||||| || | || Sbjct 1936508 AAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGTCTTCTGATACCATTGACAAC 1936567 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || |||||| || | ||||||||| Sbjct 1936568 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGTCTTATCTTC 1936627 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 1936628 GCCGGCAAGCAGCTCGAGGACGGGCGCACCCTTGCCGACTACAACATCCAGAAGGAGTCC 1936687 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1936688 ACCCTCCACCTGGT 1936701 >seq5 Length=5768508 Score = 98.7 bits (108), Expect = 2e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| ||||| ||||| || ||||| |||| Sbjct 1510899 AAGACCCTGACGGGGAAGACCATCACGTTGGAGGTGGAGTCCTCGGACACCATCGACAAC 1510958 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | ||||||||| Sbjct 1510959 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGCCTTATCTTC 1511018 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| | || || || | || | ||||| |||||| ||||||| ||||| Sbjct 1511019 GCCGGAAAGCAGCTCGAGGACGGCCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC 1511078 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 1511079 ACGCTGCACCTGGT 1511092 >seq4152 Length=1438 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || |||||||| |||| ||||| || ||||| |||| Sbjct 549 AAGACCCTGACGGGCAAGACGATCACGCTGGAGGTGGAGTCCTCGGACACCATCGACAAC 490 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || ||||||| || | || |||||| Sbjct 489 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAGCAGCGGCTGATCTTC 430 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || | ||||| |||||| ||||||| ||||| Sbjct 429 GCCGGTAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAACATCCAGAAGGAGTCG 370 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 369 ACCCTGCACCTGGT 356 >seq69 Length=1663458 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 206258 TTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGT 206317 |||| || || || || ||| || ||| ||||| || ||||| || || ||||| | Sbjct 149524 TTCAGGACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATCTTTGCTGGTAAGCAAT 149465 Query 206318 TGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTG 206377 |||||||||| || || || || ||||||||| | ||||||||||| || |||||| | | Sbjct 149464 TGGAAGATGGGAGAACGTTAGCTGATTACAACATTCAGAAAGAGTCGACGCTTCACTTGG 149405 Query 206378 TTTTGAGACT 206387 | |||| || Sbjct 149404 TCCTGAGGCT 149395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181642335456906