Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq7681 452 1e-122 seq21 242 1e-59 seq46 232 2e-56 seq9200 116 1e-21 seq581 104 7e-18 >seq7681 Length=829 Score = 452 bits (500), Expect = 1e-122 Identities = 467/606 (77%), Gaps = 4/606 (1%) Strand=Plus/Plus Query 19879 TTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCT 19937 ||||||| |||||| || || ||||| |||||||| || |||| || ||||| | | | Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTT 59 Query 19938 ACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCA 19997 |||| ||||||| || || ||||| |||| ||||||||| || ||||| ||||| |||| Sbjct 60 ACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCA 119 Query 19998 ACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTG 20057 ||| ||| | |||||||| || || || ||||| || ||||| || || |||||| | | Sbjct 120 ACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAG 179 Query 20058 GTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGT 20117 |||| |||||||||||||| || || ||||||||||| ||||| ||||| | || || | Sbjct 180 GTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT 239 Query 20118 CCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTTACAAGTTTGGG 20176 | | | ||| | | || || |||||| | ||| | || | |||||||| ||||| Sbjct 240 C-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGT 298 Query 20177 CAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGACGTTTGATCTTC 20236 ||||| |||||||| |||||||| || || ||||| ||||| ||||| || || |||||| Sbjct 299 CAAGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTC 358 Query 20237 CAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTG 20296 ||||| ||| ||||||||| |||||| ||||||||||| | ||||| ||||| || Sbjct 359 CAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTA 418 Query 20297 GTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTC 20356 |||||||| |||||| |||| || || || ||| ||||| || || || || |||||| Sbjct 419 GTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTC 478 Query 20357 AACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATT 20416 || || ||||| || | | || | | | ||||| || ||| ||||||||||||| || Sbjct 479 AATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATC 538 Query 20417 CTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCA 20476 |||| ||||||||||| || | || || ||||| ||||| |||||||| |||||||| Sbjct 539 ATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCT 598 Query 20477 CTTGAC 20482 || ||| Sbjct 599 CTAGAC 604 >seq21 Length=3603864 Score = 242 bits (268), Expect = 1e-59 Identities = 389/550 (71%), Gaps = 9/550 (2%) Strand=Plus/Plus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || ||||| || ||||| ||||| || |||||||| || || || || || Sbjct 2753493 TTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 2753552 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCA 19715 | ||| | ||||||||||||| || || || || ||| | |||| | ||| Sbjct 2753553 TTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCA 2753612 Query 19716 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCT 19775 || ||| || | || || |||||| |||| ||||| | ||||||||||| | | Sbjct 2753613 --GCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTAT 2753670 Query 19776 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACA 19835 |||| || || || | | || | || | |||||| | |||| | | ||| | Sbjct 2753671 ACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATA 2753730 Query 19836 TGGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCT 19895 |||| || || ||||||||||| | | | || ||| | ||||||||| |||||||| Sbjct 2753731 TGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCT 2753790 Query 19896 ACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGT 19954 | || |||| |||||||| || | || | ||||| | ||||||| |||||| || Sbjct 2753791 ATTCAACTCCTGTTGCAGCTGCTACAGCTAT-TTTCTTGATCTACCCTACTGGTCAAGGA 2753849 Query 19955 AGCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTC 20014 || || || ||| |||| |||| || ||||| ||||| ||||||| ||| | |||||| Sbjct 2753850 AGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTC 2753909 Query 20015 CAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTATTC 20074 || || | || ||||| || | ||| || || ||||| | ||||| |||||||||||| Sbjct 2753910 CAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTC 2753969 Query 20075 GGTGGGTCACTATTCAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGA 20133 || || || ||||||||||| ||||| |||| |||| || || | ||| | | || Sbjct 2753970 GGCGGTTC-CTATTCAGTGCTATGCATAGTTC-CTTGGTAACCTCTAGTTTGATCAGGGA 2754027 Query 20134 GACTACTGAA 20143 ||| |||||| Sbjct 2754028 GACCACTGAA 2754037 >seq46 Length=2187656 Score = 232 bits (256), Expect = 2e-56 Identities = 341/476 (72%), Gaps = 5/476 (1%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||||| || |||||||| || | ||| | || |||||||| || ||| | || | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 | ||| | |||||||||||||| || || || || | | | |||| | | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 || |||||| | || || |||||||||||||||||| || |||||||||||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTG-GCATCTATGCTTACAT 19836 || || || || | | || | || | || ||| | ||| | | || || ||| || Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TG-TTATAT 1370595 Query 19837 GGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTA 19896 ||| || ||||||||||||| | | || || ||| ||||||||| |||||| || Sbjct 1370594 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 1370535 Query 19897 CTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTA 19955 || ||||| |||||||| || |||| || ||||| | | ||| | | ||||| || | Sbjct 1370534 TTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTACGCTATCGGTCAAGGAA 1370476 Query 19956 GCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCC 20015 | ||||| |||| |||| |||| || ||||| ||||| ||||||| ||| | |||||| Sbjct 1370475 GTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCG 1370416 Query 20016 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTGGTGTA 20071 | | || || ||||| || ||||| || || |||||| | ||||| ||||||||| Sbjct 1370415 AGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTA 1370360 >seq9200 Length=658 Score = 116 bits (128), Expect = 1e-21 Identities = 197/281 (70%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | || |||||||| | || |||||||| ||||||| Sbjct 359 AACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATC 418 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | || | || ||||| || ||||| || || || ||||| Sbjct 419 CC-TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGT 477 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | |||||||||||||| || || Sbjct 478 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 537 Query 19690 ATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || ||| | |||| | | || || |||||| | || || |||||||||||| Sbjct 538 CTCTGGTGCCATTATTCCTACTTCTGC--GGCGATCGGATTGCATTTTTACCCAATTTGG 595 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACC 19788 |||||| || ||||||||||| | ||||| || || || Sbjct 596 GAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCC 636 >seq581 Length=5673 Score = 104 bits (114), Expect = 7e-18 Identities = 239/357 (67%), Gaps = 15/357 (4%) Strand=Plus/Plus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 5319 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 5378 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 5379 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGT 5437 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | |||||||||||||| || || Sbjct 5438 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 5497 Query 19690 AT-----CGGGAGCCGTCGTTCCGAGCAGCAAT----GCCATCGGACTACACTTCTACCC 19740 || | || ||| | |||| | | | || |||||| | ||||| ||||| Sbjct 5498 ATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCC 5557 Query 19741 AATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19800 ||||||||| || ||||||| ||| | ||||| || || || | | || | Sbjct 5558 ----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAAT 5613 Query 19801 GGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAG 19857 || | |||||| | |||| | | ||| ||||| || |||||||||||||| Sbjct 5614 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAG 5670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148807970107188