Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq7681 399 6e-107 seq46 183 9e-42 seq21 181 3e-41 seq9200 111 5e-20 >seq7681 Length=829 Score = 399 bits (442), Expect = 6e-107 Identities = 452/603 (75%), Gaps = 2/603 (0%) Strand=Plus/Plus Query 29008 TGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTAC 29067 |||||| ||| ||||| |||||||| || ||||| || |||| |||||| | | ||| Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 29068 CCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAAC 29127 || | |||||||| ||| || | |||||||| || || || || || |||||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 29128 TACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGC 29187 | ||| | || ||||| || || || ||||| || ||||| || || |||||| | || Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 29188 GTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCC 29247 || ||||| || ||||| || || ||||| ||||| ||||| ||||| | || || || Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC- 240 Query 29248 TCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTACAAGTTTGGACA 29306 | | ||| | | || || |||||| | ||| || | |||||||| ||||| || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 29307 AGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCA 29366 ||| ||||||||||||||||| || || ||||||||||| ||||| || || |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 29367 ATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGT 29426 ||||||| |||||| || |||||| ||||||||||| | ||||| ||||| || || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 29427 AGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAA 29486 |||||| |||||| |||| || || || ||| ||||| || || || || ||||| || Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 29487 CTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCT 29546 || ||||| || | | || | | | ||||| || |||||||||||||||||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 29547 CAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACT 29606 ||| || ||||| || || | ||||||||||| || ||||||||||| |||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 29607 TGA 29609 || Sbjct 601 AGA 603 >seq46 Length=2187656 Score = 183 bits (202), Expect = 9e-42 Identities = 325/473 (69%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || |||||||| || | ||| | || |||||||| || ||| | ||| | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 ||| | | || ||||||||||| || || || || | | | | || | | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 || |||||| | || || |||||||||||||||||| || |||||||||||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 28965 || || || || | | || | || | || ||| | ||| || | ||| ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATATG 1370594 Query 28966 GGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATAC 29025 || || ||||||||||||| | | || || ||| || |||||| ||| ||||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 29026 TCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCT 29085 |||||||| || ||||| || |||| |||||| | | ||| | |||||||||| | Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 29086 TTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCAA 29145 || || | ||| |||| || || || || || ||||||| ||| | || ||| | Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 29146 GCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGT 29198 | || || ||||| || ||||| || || |||||| | || || ||||| || Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq21 Length=3603864 Score = 181 bits (200), Expect = 3e-41 Identities = 373/549 (68%), Gaps = 7/549 (1%) Strand=Plus/Plus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||||| || ||||| || || || ||||| || |||||||| || || || ||||| Sbjct 2753493 TTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 2753552 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCA 28843 ||| | | | ||||||||||| || || || || ||| | | || | ||| Sbjct 2753553 TTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCA 2753612 Query 28844 ATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCT 28903 || ||| || | || || |||||| |||| ||||| | ||||||||||| | | Sbjct 2753613 --GCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTAT 2753670 Query 28904 ACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACA 28963 |||| || || || | | || | || | |||||| | |||| || | ||| | Sbjct 2753671 ACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATA 2753730 Query 28964 TGGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCAT 29023 |||| || || ||||||||||| | | | || ||| | || |||||| ||| || | Sbjct 2753731 TGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCT 2753790 Query 29024 ACTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTT 29083 | ||| |||| || ||||| || | || ||||| | ||||||| |||||||| Sbjct 2753791 ATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAA 2753850 Query 29084 CTTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCC 29143 |||| | | ||| |||| || || || || || ||||||| ||| | || |||| Sbjct 2753851 GTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCC 2753910 Query 29144 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTGGAGTGTTCG 29203 | || | || ||||| || | ||| || || ||||| | || || ||||| || |||| Sbjct 2753911 AGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCG 2753970 Query 29204 GTGGCTCGCTATTTAGTGCAATGCACGGTTCGCTTGTCACGTCCTCGCTTG-TGCGTGAG 29262 | || || ||||| ||||| ||||| |||| | || || | || | ||| | | ||| Sbjct 2753971 GCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCT-CTAGTTTGATCAGGGAG 2754028 Query 29263 ACGACTGAA 29271 || |||||| Sbjct 2754029 ACCACTGAA 2754037 >seq9200 Length=658 Score = 111 bits (122), Expect = 5e-20 Identities = 196/281 (70%), Gaps = 6/281 (2%) Strand=Plus/Plus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | || |||||||| | || |||||||| ||||||| Sbjct 359 AACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATC 418 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | || | || ||||| || ||||| || || || ||||| Sbjct 419 CC-TACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGT 477 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| |||| | | || ||||||||||| || || Sbjct 478 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 537 Query 28818 ATCGGGAGCCGTCGTACCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || ||| | | || | | || || |||||| | || || |||||||||||| Sbjct 538 CTCTGGTGCCATTATTCCTACTTCTGC--GGCGATCGGATTGCATTTTTACCCAATTTGG 595 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 28916 |||||| || ||||||||||| | ||||| || || || Sbjct 596 GAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCC 636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146645072865956