Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq7681 439 7e-119 seq21 253 6e-63 seq46 233 5e-57 seq9200 154 4e-33 seq581 145 2e-30 >seq7681 Length=829 Score = 439 bits (486), Expect = 7e-119 Identities = 468/614 (76%), Gaps = 8/614 (1%) Strand=Plus/Plus Query 19098 TTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTA 19157 ||||||| |||||| || |||||||||||||| || || |||| || ||| | | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 19158 TCCATTTGGTCAAGG---TTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTT 19214 || |||||||||| || || | || | ||||||||| || || |||||| || Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATCTCTGGTACTTT 117 Query 19215 CAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCT 19274 ||||| ||| ||||||||||||| || || |||||||| ||||| || || |||||| | Sbjct 118 CAACTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTT 177 Query 19275 CGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTAC 19334 ||||| |||||||| |||||||| || ||||| ||||| ||||| ||||| | || || Sbjct 178 AGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAAC 237 Query 19335 GTCCTCGCTTGTGC-GTGAAACTACTGAAGAGGTATCTCAGAACTATGGCTACAAGTTTG 19393 || | | ||| | | ||||| |||||| | | |||| || | || ||||| |||| Sbjct 238 CTC-TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTG 296 Query 19394 GGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGGTCGGCTTATTT 19453 | ||||| |||||||||||||||||||| |||||||| || ||||||||||| | || | Sbjct 297 GTCAAGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCT 356 Query 19454 TCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTG 19513 |||| || || |||||||| |||||| |||| ||||| |||||||||||||||| Sbjct 357 TCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTG 416 Query 19514 TGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAACTTGAATGGCT 19573 | || || || ||||| | || | || | || || |||||||||||| | ||||| | Sbjct 417 TAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTT 476 Query 19574 TTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATACTTGGGCTGACA 19633 | || || ||||| || | |||| | | | ||||| || ||| ||||||||||||| | Sbjct 477 TCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATA 536 Query 19634 TTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGCTCATAACTTCC 19693 | |||| |||||||| || || | || ||||||||||||||||||||||| ||||||| Sbjct 537 TCATCAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCC 596 Query 19694 CACTTGATTTGGCT 19707 | || || || ||| Sbjct 597 CTCTAGACTTAGCT 610 >seq21 Length=3603864 Score = 253 bits (280), Expect = 6e-63 Identities = 412/583 (71%), Gaps = 10/583 (2%) Strand=Plus/Plus Query 18755 GTCTTTATATCGGCTGGTTTGGAACACTGATGATTCCGTGTCTCCTTG-CAGCTACTATT 18813 ||||||| || | |||||||| ||||||| || | || ||| | || ||| | Sbjct 2753431 GTCTTTACATGCGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACT-TC 2753488 Query 18814 TGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCC 18872 || || ||||| |||||||| || || ||||| ||||| |||||||| || || ||||| Sbjct 2753489 CGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCC 2753548 Query 18873 TGTTGCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--C 18930 |||| || | | ||||||||||||| || || || || ||| | |||| | Sbjct 2753549 TGTTTTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTC 2753608 Query 18931 AGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGG 18990 ||| || ||| || | || || |||||| |||| ||||| | ||||||||||| Sbjct 2753609 TGCA--GCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGG 2753666 Query 18991 CTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCT 19050 | ||||| || || || | | || | || | |||||| | |||| || | | Sbjct 2753667 TTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 2753726 Query 19051 TACATGGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTT 19110 || ||||| || || ||||||||||| | | | || ||||| ||||||||| |||| Sbjct 2753727 TATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTT 2753786 Query 19111 GCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAA 19170 ||||| ||| |||||||||| || || | || | ||| | |||| || ||||||| Sbjct 2753787 GCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAA 2753846 Query 19171 GGTTCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTA 19230 || ||| | | |||| |||| || || |||||| ||||||| ||| ||||| Sbjct 2753847 GGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTA 2753906 Query 19231 TTCCAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGTG 19290 |||||||| | || |||||||| | ||| || || ||||| | ||||| |||||||| Sbjct 2753907 TTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTA 2753966 Query 19291 TTCGGCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTA 19333 |||||||| || ||||| ||||| ||||| |||| |||| || Sbjct 2753967 TTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTC-CTTGGTA 2754007 >seq46 Length=2187656 Score = 233 bits (258), Expect = 5e-57 Identities = 339/476 (71%), Gaps = 7/476 (1%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||||| ||||||||||| || | ||| |||| |||||||| || ||| ||||| || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 18936 || | | |||||||||||||| || || || || | | | |||| | | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 18937 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 18996 || |||||| | || || |||||||||||||||||| || |||||||||||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 18997 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATG 19056 || || || || | | || | || | || ||| | ||| || | ||| ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATATG 1370594 Query 19057 GGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTAC 19116 || || ||||||||||||| | | || || |||| ||||||||| |||||| || Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 19117 TCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAG---GT 19173 |||||||||||||| || || |||| || ||| | | || | | ||||||| || Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 19174 TCCTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTC 19233 | || | || | |||| |||| || || |||||| ||||||| ||| |||||||| Sbjct 1370473 TTCTCT---GATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTC 1370417 Query 19234 CAGGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTGGTGT 19289 ||| || || |||||||| ||||| || || |||||| | ||||| |||||||| Sbjct 1370416 GAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 1370361 >seq9200 Length=658 Score = 154 bits (170), Expect = 4e-33 Identities = 207/281 (74%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || || |||||||| ||||| |||||||| ||||||| | Sbjct 360 ACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCC 419 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | || || ||||| |||||||| || || ||||| || Sbjct 420 C-TACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGT 477 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | |||||||||||||| || || Sbjct 478 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 537 Query 18909 ATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | || || |||||| | || || |||||||||||| Sbjct 538 CTCTGGTGCCATTATTCCTACTTCTGC--GGCGATCGGATTGCATTTTTACCCAATTTGG 595 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACC 19007 |||||| || ||||||||||| | ||||| || || || Sbjct 596 GAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCC 636 >seq581 Length=5673 Score = 145 bits (160), Expect = 2e-30 Identities = 250/357 (70%), Gaps = 17/357 (5%) Strand=Plus/Plus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 5320 ACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 5379 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| || ||||| ||||| ||||| || Sbjct 5380 C-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGT 5437 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | |||||||||||||| || || Sbjct 5438 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 5497 Query 18909 AT-----CGGGAGCCGTCGTTCCGAGCAGCAAT----GCCATCGGACTACACTTCTACCC 18959 || | || ||| | |||| | | | || |||||| | ||||| ||||| Sbjct 5498 ATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACCC 5557 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||||||||| || ||||||| ||| | ||||| || || || | | || | Sbjct 5558 ----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAAT 5613 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAG 19076 || | |||||| | |||| || | ||| ||||| || |||||||||||||| Sbjct 5614 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAG 5670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141129044990388