Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq93 96.9 3e-15 seq22 87.8 2e-12 seq131 84.2 2e-11 >seq93 Length=1192474 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/211 (71%), Gaps = 5/211 (2%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||||||||| ||||||||| ||| || ||| ||| |||||| | Sbjct 325415 AAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGGCT 325360 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTTTA 46894 || || ||||| ||||| ||| | || |||||||| ||| |||||| || | Sbjct 325359 CGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTG 325300 Query 46895 CATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGCGA 46954 | || | ||| | ||||||||||| || ||| |||||| | ||||| ||||| Sbjct 325299 GCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGA 325240 Query 46955 CGAAGGACTACACACGGACTTTGCGTGTCTC 46985 ||| || || ||| ||||||||||| ||| Sbjct 325239 CGAGGGTCTGCACTGCGACTTTGCGTGCCTC 325209 >seq22 Length=3457718 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 || ||||||| || | ||| | | || || || || |||||||| || || |||| Sbjct 1877648 CGTAAGCGCAGGACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCTGCCAAGGTA 1877589 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 ||| ||| || ||||| || |||| | |||| || | ||| ||||||||||| || ||| Sbjct 1877588 CGCCCATCCTCAAGCTGCTTCCCGGCAAAGATAAGCCTCTGCTGATCTGGAGGAATTCCT 1877529 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 || || || || || |||| | || | || || | |||||| || | | Sbjct 1877528 TCCTTGTCCTGGATCTTGGCCTTCACATTATCAATGGTGTCCGAGCTCTCCACCTCTAGC 1877469 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||| || ||||||||||| || | || |||||||| Sbjct 1877468 GTGATCGTCTTGCCAGTCAGAGTCTTGACAAAGATCTGCAT 1877428 >seq131 Length=616296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 150/212 (71%), Gaps = 9/212 (4%) Strand=Plus/Minus Query 46776 AAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGA-GACCGCCACGCTGGCCGAGCGCAT 46834 |||||| ||||| ||||| ||||||||| ||| || ||| ||| |||||| | Sbjct 272927 AAGGCCGAGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGCTTCGC----CGAGCGTCT 272872 Query 46835 GGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCA-GTTTTGCCGCCATTTTTT 46893 || || ||||| ||||| ||| | || || |||||| ||| ||| ||||| || | Sbjct 272871 TGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTTCTGC-GCCATCTTCT 272813 Query 46894 ACATTAA-AACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 | || || | ||| | ||||||||||| || ||| |||||| | ||||| ||| Sbjct 272812 GGCTCAAGAAACGCGGGC-TCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCCGC 272754 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCT 46984 ||||| || || ||| ||||| ||||| || Sbjct 272753 GACGAGGGCCTGCACTGCGACTTCGCGTGCCT 272722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476540983254960