Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq1065 636 2e-177 seq7681 423 2e-113 seq21 295 8e-75 seq46 253 2e-62 seq9200 161 1e-34 seq581 156 5e-33 >seq1065 Length=3091 Score = 636 bits (704), Expect = 2e-177 Identities = 753/1015 (74%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 159379 TTTGATGTCCTGGATGACTGGCTTAAACGAGATCGCTTTGTCTTTGTGGGTTGGTCTGGA 159438 |||||| | |||| |||||| | | |||| || || || ||||| || |||||||| Sbjct 2440 TTTGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGC 2381 Query 159439 CTCCTACTTCTTCCCACTGCTTATATGGCCATTGGCGGTTGGCTTACTGGCACGACTTTT 159498 || | || |||| ||||||| | || | || |||||| |||| || || |||||| Sbjct 2380 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2321 Query 159499 ATCACGAGTTGGTACACCCACGGTCTTGCTAGTTCCTACCTTGAAGG-TGCTAATTTTCT 159557 | || |||||| ||||| || | ||||||||||| | ||||| ||| ||||| | Sbjct 2320 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGC-AATTTCTT 2262 Query 159558 CACGGCAGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGG 159617 ||||| || || || || |||||| || | | | || ||| | | ||||| ||||| Sbjct 2261 AACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 2202 Query 159618 TCCTGAGTCTCAAGGCGACTTCCAACGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGT 159677 || || | ||||| || || || ||||| ||| | || || | ||| | ||||| Sbjct 2201 ACCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 2142 Query 159678 TGCTCTCCACGGTGCATTCGCTCTCATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG 159737 |||||||| || || || || || |||||||| ||| |||| ||||||||| ||||||| Sbjct 2141 CGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 2082 Query 159738 -TCTAGTTGGTATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTG 159796 ||| ||| | | ||||| ||||| ||| | ||||||||||| || || ||||||| Sbjct 2081 GTCT-GTTCAATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTG 2023 Query 159797 TCAGCGTATTCCTTATCTATCCACTGGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCG 159856 | |||||||||||| ||||||||||| || ||| |||||||||||||| ||||| | Sbjct 2022 TTTCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTG 1963 Query 159857 GGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACCCTCA 159916 | |||||||| || ||| ||||| | | ||| | || || || || || ||||| | | Sbjct 1962 GCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGA 1903 Query 159917 ACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTGTTGTGTGCAATCC 159976 ||||||| ||||||||||||||||| || || |||| | || ||| | || || || | Sbjct 1902 ACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTC 1843 Query 159977 ATGGTGCTACTGTAGAGAACACATTGTTTGAAGATGGAGAACAAGCAAACACATTTAAGG 160036 |||| ||||||||||| ||||| | || |||||||| || || || || || | Sbjct 1842 ATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAG 1783 Query 160037 CGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGT 160096 | ||| | || ||||||| ||||| |||||||| ||||| ||||| |||||||| |||| Sbjct 1782 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGT 1723 Query 160097 CGCAGATCTTCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTG 160156 | || ||||| |||||||| ||||| || || || ||| | ||||| || ||| | |||| Sbjct 1722 CCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTG 1663 Query 160157 TGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTC 160216 | || || | ||| |||||| |||||||| | |||| || ||| | ||||| | Sbjct 1662 TACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTAC 1603 Query 160217 GTGCTTACGATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCT 160276 |||| || || ||||| ||||| || | ||||| |||||||||||||||||||| | Sbjct 1602 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 1543 Query 160277 TCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTTGGATGGCACCTGCTGATC 160336 |||||||||| || ||||| || || || || ||||||| ||||||||| || |||| Sbjct 1542 TCTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATC 1483 Query 160337 AACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTAGAGGTAACGCACT 160391 | || |||||||| |||| ||||||||||| || ||||| | || ||||| || Sbjct 1482 AGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 1428 >seq7681 Length=829 Score = 423 bits (468), Expect = 2e-113 Identities = 463/613 (76%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 158051 TGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTAT 158110 ||||| ||| |||||||| ||||| || || || || | ||| || ||| | | || Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 158111 CCTTTCGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAAC 158170 ||| | |||||||| |||||| |||| ||||||| | || |||||||||||||| ||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 158171 TACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGT 158230 | ||| |||||||||| ||||| ||||||||||||||||| || || || ||| | ||| Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 158231 GTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTCGTTACTTCC 158290 || ||||| |||||||| || || || ||| |||||||||||| | || || || Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC- 240 Query 158291 TCACTCGTTC-GTGAAACGACTGAAACAGAGTCACAGAACTACGGTTATAAGTTCGGTCA 158349 | | | || | ||||| ||||||| || || || | ||||| || || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 158350 AGAAGAAGAGACCTACAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCA 158409 ||| |||||||| || ||||| || || || || || || || ||||| || |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 158410 ATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGT 158469 ||| ||| ||||||||||| ||||| || ||||||||| | ||||| |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 158470 CGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAA 158529 || ||||||||||| || | || | || |||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 158530 CTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTACT 158589 |||||||| || | ||||| | || ||||| || | || || ||||| ||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 158590 GAACCGCGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACT 158649 ||||| ||| ||||||||||||||| ||||| || ||||| || ||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 158650 GGATCTTGCTGCT 158662 || | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 295 bits (326), Expect = 8e-75 Identities = 438/616 (71%), Gaps = 4/616 (1%) Strand=Plus/Plus Query 157658 ACATCCCCGTGGAATAACTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTT 157717 |||| || |||| || ||||||| | | | |||| |||||| || || | || | Sbjct 2753383 ACATGCCTGTGGTATCGCTTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATG 2753441 Query 157718 GGTTGGTTCGGTGTACTGATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGT 157776 | ||||| ||||| ||||||| ||||| || | |||||||| || || || || | Sbjct 2753442 CGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACT-TCCGTATTTATTAT 2753500 Query 157777 CGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTC 157836 ||||||| |||| ||||| || || || ||||| || || || || || ||| |||||| Sbjct 2753501 CGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTC 2753560 Query 157837 ACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGG 157896 | || ||||| ||||| || ||||||||||| || ||||| ||| || ||| | Sbjct 2753561 TTTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAG 2753620 Query 157897 TCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGG 157956 | || || ||||| | || ||||| |||| | |||| || ||| | || || ||||| Sbjct 2753621 ATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGG 2753680 Query 157957 TCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGA 158016 ||||| | || | || | |||||| | | || | | |||||||| ||||| Sbjct 2753681 TCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGA 2753740 Query 158017 GTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCC 158076 |||||||| || |||| |||||||| || ||||| ||| || ||||| |||| Sbjct 2753741 ATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCC 2753800 Query 158077 AGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGA 158136 || || || || | || | ||| | |||| ||| |||||||| ||| || | Sbjct 2753801 TGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAA 2753860 Query 158137 TGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACA 158196 || |||| || | || |||||||||||||| |||| ||| |||||||||| ||| | || Sbjct 2753861 TGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCA 2753920 Query 158197 CAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCT 158256 ||||||||||| ||| || || || || | ||||| ||||| |||||||| || || || Sbjct 2753921 CAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CT 2753979 Query 158257 TTTCTCTGCTATGCAT 158272 ||| |||||||||| Sbjct 2753980 ATTCAGTGCTATGCAT 2753995 >seq46 Length=2187656 Score = 253 bits (280), Expect = 2e-62 Identities = 358/498 (72%), Gaps = 4/498 (1%) Strand=Plus/Minus Query 157757 GCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATC 157816 |||||| || ||| || |||||||| | || || | || | || ||||| || || Sbjct 1370843 GCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATT 1370785 Query 157817 CGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTT 157876 ||| | || || |||||| | | ||||| ||||| || |||||||||| || || Sbjct 1370784 CGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATT 1370725 Query 157877 CCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGAC 157936 || | || || ||||| | || || ||||| || |||||||| ||||||||||| Sbjct 1370724 CCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGAT 1370665 Query 157937 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCG-GCAT 157995 || ||| | || || |||||||||| | || | || | || ||| | | | | | Sbjct 1370664 GAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAG 1370605 Query 157996 CTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGAT 158055 || || |||||||| |||||||||||||| || | || | ||||||| || ||||| Sbjct 1370604 CT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT 1370547 Query 158056 CTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTT 158115 ||| |||||||| ||||| || || || || | ||| || ||| | | || || | Sbjct 1370546 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTAT 1370487 Query 158116 CGGTCAAGGTTCTTTCTCCGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACAT 158175 ||||||||| |||||| |||| |||| || | || |||||||||||||| |||| || Sbjct 1370486 CGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTAT 1370427 Query 158176 GCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGC 158235 | |||||||| | | ||| ||||||||||||||||| || || || ||| | ||||| || Sbjct 1370426 GATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 1370367 Query 158236 TGGGGTATTCGGTGGATC 158253 ||| ||| |||| ||| Sbjct 1370366 TGGTGTAGCTGGTGCATC 1370349 >seq9200 Length=658 Score = 161 bits (178), Expect = 1e-34 Identities = 210/288 (73%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||| | ||| |||| ||| | || ||| | || | || ||||| ||||| | Sbjct 352 CTTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTT 411 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| || || || || |||||||| |||| || | Sbjct 412 GATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCC 470 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || || || || || ||| ||||||| | | ||||| |||| Sbjct 471 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 530 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 | || ||||||||||| || |||||| ||| || ||||| | || || ||||| | Sbjct 531 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAA 590 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTT 157961 | |||||||| |||||| |||| || ||| | || || |||||||||| Sbjct 591 TTTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 156 bits (172), Expect = 5e-33 Identities = 253/361 (70%), Gaps = 15/361 (4%) Strand=Plus/Plus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||| | ||| |||| ||| | |||||| | || | || ||||||||||| | Sbjct 5312 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 5371 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| ||||| || || |||| ||| ||||||| | Sbjct 5372 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 5430 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || || || || || ||| ||||||| | | ||||| |||| Sbjct 5431 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 5490 Query 157854 -----ACATCATCTCTGGTGCAGTTGTT----CCTAGTTCAAACGCAATCGGTCTCCACT 157904 | || ||||||||||| || || |||| ||| || ||||| | |||| Sbjct 5491 ATATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACT 5550 Query 157905 TCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCC 157964 | |||| ||||||||| |||||| |||| |||||| | || || || ||||||| Sbjct 5551 TTTACC----CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATG 5606 Query 157965 AACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAAC 158024 | || | || | |||||| | | || | | |||||||| ||||||||||||| Sbjct 5607 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 5666 Query 158025 T 158025 | Sbjct 5667 T 5667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572939579239200