Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq1065 504 9e-138 seq7681 455 4e-123 seq21 289 3e-73 seq46 226 3e-54 seq9200 145 9e-30 seq581 131 2e-25 >seq1065 Length=3091 Score = 504 bits (558), Expect = 9e-138 Identities = 719/1006 (71%), Gaps = 6/1006 (1%) Strand=Plus/Minus Query 182371 TGGACGACTGGGTTAAACGGGATCGCTTTGTCTTTGTGGGTTGGTCTGGACTCCTACTTC 182430 ||||||||||| | | | || || || || ||||| || |||||||| || | || Sbjct 2430 TGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 2371 Query 182431 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGGACAGCTTTTGTTACGAGTT 182490 |||| ||||||| | || | || |||||| |||| ||||| ||||||| || || Sbjct 2370 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 2311 Query 182491 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 182548 |||| ||||| || | ||| ||||||| | ||||| ||| | ||||||| |||| || Sbjct 2310 GGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAA--TTTCTTAACGGCGGC 2253 Query 182549 TGTCTCGACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 182608 || || || |||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 2252 GGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAGC 2193 Query 182609 TCAGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 182668 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 2192 ACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCA 2133 Query 182669 CGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCGC-CTGATTG 182727 || || || || || || ||||||||| | | ||||||||||||||||| ||| || Sbjct 2132 TGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTG-TTC 2074 Query 182728 GAATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGT 182787 | | || ||||| ||||| ||| | || |||||||| || || || || || || | Sbjct 2073 AATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCGTAT 2014 Query 182788 TCCTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGG 182847 |||| || ||||| |||| || || |||||| || || ||| ||||| || || | Sbjct 2013 TCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAG 1954 Query 182848 CGATCTTCAGGTTCCTGTTGTTCCTTCAGGGTTTCCACAACTGGACACTCAACCCCTTCC 182907 | || || | ||| | | ||| | || || || || || ||||| | |||||||| | Sbjct 1953 CTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTC 1894 Query 182908 ATATGATGGGAGTTGCTGGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCA 182967 |||||||||||||||| || || | || | || ||||| | ||||| ||||| | | Sbjct 1893 ATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCTA 1834 Query 182968 CAGTAGAGAATACCTTGTATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATT 183027 | ||||| || || | | |||||||| || || || || || ||| || | Sbjct 1833 CTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTAACC 1774 Query 183028 CCACTCAGGAGGAGGAGACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCT 183087 | ||||| | ||| || || ||||| |||||||| || || || |||||||| ||||||| Sbjct 1773 CAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCT 1714 Query 183088 TCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCA 183147 | || ||||| ||| |||||| |||||||| || ||||||||| | ||||| || |||| Sbjct 1713 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 1654 Query 183148 TGGGTCTTTGGGTCTCTTCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATG 183207 ||| | ||| | | ||||||| | |||| || ||||| || || ||||| |||| Sbjct 1653 CCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATG 1594 Query 183208 ATTTTGTGAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACAA 183267 | || || || || || | ||||| ||||||||||| || ||||| |||||||| | Sbjct 1593 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 1534 Query 183268 AGAACATCCTTCTCAATGAAGGACTACGTGCTTGGTTGGCACCTGCCGATCAACCACATG 183327 | || |||||| | || || || | ||||| ||| ||||| || ||||| || |||| Sbjct 1533 AAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATG 1474 Query 183328 AAAACTTCATCTTCCCTGAAGAAGTTCTACCTAGAGGTAACGCACT 183373 |||| | || |||||||| || |||||||| | || ||||| || Sbjct 1473 AAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 1428 >seq7681 Length=829 Score = 455 bits (504), Expect = 4e-123 Identities = 462/602 (77%), Gaps = 0/602 (0%) Strand=Plus/Plus Query 181356 TGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTAT 181415 ||||| ||||||||| || ||||| || ||||| || ||||||| ||| | | || Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 181416 CCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAAC 181475 ||| | |||||||| ||||||||| | ||||| | || ||||||||||| |||||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 181476 TACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGT 181535 | ||| |||| ||||| |||||||||||||| || |||||||| || |||||||| ||| Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 181536 GTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGGTTCTTTGGTTACATCT 181595 || || |||||||| || ||||| || |||||||| ||||| ||||| ||||| || ||| Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 241 Query 181596 TCACTCGTCCGTGAGACGACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGACAA 181655 | || | || || ||||||| ||| || || | |||||||| || || ||| Sbjct 242 AGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCAA 301 Query 181656 GAAGAAGAGACATACAACATCGTCGCCGCCCACGGTTACTTTGGTCGCTTGATCTTCCAA 181715 || |||||||| || ||||| || || || |||||||| |||||||| || ||||||||| Sbjct 302 GAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAA 361 Query 181716 TATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTAGTT 181775 |||||| ||||||||||| ||||| | ||||||||| | || || ||||||||||| Sbjct 362 TATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTA 421 Query 181776 GGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGGCATTTAACCTCAATGGATTCAAC 181835 || ||||||||||| || | || | || || |||||||| ||||| ||||| ||||| Sbjct 422 GGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAAT 481 Query 181836 TTCAACCAGTCTATCCTCGACGGACAAGGACGTGTCCTCAACACCTGGGCAGACGTGCTC 181895 |||||||| ||| | | || | ||||| || || | || || ||||| || | || Sbjct 482 TTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATC 541 Query 181896 AACCGTGCCGGTCTCGGCATGGAAGTCATGCACGAGCGCAACGCGCACAACTTCCCGCTT 181955 |||||||| ||| || |||||||| |||||||| || || || ||||||||||| || Sbjct 542 AACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCTA 601 Query 181956 GA 181957 || Sbjct 602 GA 603 >seq21 Length=3603864 Score = 289 bits (320), Expect = 3e-73 Identities = 456/648 (70%), Gaps = 4/648 (1%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | | | ||||| ||||| || | || || | | ||||| || || || Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| || || || || |||||||| |||| ||||| Sbjct 2753460 ATGATCCCTACCTTATTGACTGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCC 2753518 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || ||||| || || |||||| | || ||||| ||||| Sbjct 2753519 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAA 2753578 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||||||||| || |||| | ||| || || | | || || || || | Sbjct 2753579 TATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACT 2753638 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 181279 || ||||| |||| ||||||| ||| | || || |||||||||| | || | || Sbjct 2753639 TTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGT 2753698 Query 181280 CTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCG 181339 | |||||| | | || | | || ||||| |||||||||||||| || | Sbjct 2753699 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATG 2753758 Query 181340 CTTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGC 181399 || |||||||| || ||||| |||||| || || |||| || ||||| || | || Sbjct 2753759 TTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGC 2753818 Query 181400 TGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCAT 181459 | | ||| | |||| ||| |||||||| ||| ||| | | ||| | | || || Sbjct 2753819 TATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAAT 2753878 Query 181460 CTCTGGTACATTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCC 181519 ||||||||| ||||||| ||| |||| ||||| ||| |||||||||| || | |||||| Sbjct 2753879 CTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCC 2753938 Query 181520 CTTCCACATGTTGGGTGTCGCAGGTGTATTTGGTGGTTCACTGTTCAGTGCAATGCACGG 181579 || ||||| || ||||| || |||||||| || ||||| || |||||||| ||||| | Sbjct 2753939 ATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAG 2753997 Query 181580 TTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAACTGAGTC 181627 ||| ||||| || ||| | || | ||||| ||||||||||| || Sbjct 2753998 TTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGAAACTGAATC 2754045 >seq46 Length=2187656 Score = 226 bits (250), Expect = 3e-54 Identities = 351/499 (70%), Gaps = 2/499 (0%) Strand=Plus/Minus Query 181056 TTGGCAGCAACTATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGAC 181115 ||| | |||||| || ||| || |||||||| | || || | || | || || || Sbjct 1370849 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 1370791 Query 181116 GGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCA 181175 || || || | || | |||||| | | ||||| ||||| || |||||||||| Sbjct 1370790 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 1370731 Query 181176 GTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCA 181235 || ||||| ||| || || || | || || || || || |||||||| ||||| Sbjct 1370730 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 1370671 Query 181236 CTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATC 181295 |||||||| ||| | || || |||||||||| | || | || | || ||| ||| Sbjct 1370670 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACT 1370612 Query 181296 GGCATTTATGCATACATGGGACGTGAATGGGAACTCTCTTACCGCTTAGGTATGCGCCCC 181355 | | | || ||||| ||||| |||||||| || | | | ||||||| || Sbjct 1370611 TGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCT 1370552 Query 181356 TGGATCTGTGTTGCATACTCTGCTCCAGTCGCAGCAGCATCTGCTGTATTCCTAGTCTAT 181415 ||||| ||||||||| || ||||| || ||||| || ||||||| ||| | | || Sbjct 1370551 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 1370492 Query 181416 CCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCACTTGGCATCTCTGGTACATTCAAC 181475 || |||||||||| ||||||||| | ||| | | || ||||||||||| |||||| Sbjct 1370491 GCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAAC 1370432 Query 181476 TACATGCTTGTTTTCCAAGCAGAGCACAACATTCTGATGCATCCCTTCCACATGTTGGGT 181535 | ||| |||| ||| | | |||||||||||| || |||||||| || |||||||| ||| Sbjct 1370431 TTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 1370372 Query 181536 GTCGCAGGTGTATTTGGTG 181554 || || |||||| ||||| Sbjct 1370371 GTAGCTGGTGTAGCTGGTG 1370353 >seq9200 Length=658 Score = 145 bits (160), Expect = 9e-30 Identities = 206/287 (72%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | ||| ||||| ||| | || || || || |||| ||||| || || || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| || || || || |||||||| |||| || || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCCC 471 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 472 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 531 Query 181160 CATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 181219 || ||||||||||| || |||| |||| || || || | || || || || || Sbjct 532 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAAT 591 Query 181220 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTT 181266 |||||||| ||||| ||||||| ||| | || || |||||||||| Sbjct 592 TTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 131 bits (144), Expect = 2e-25 Identities = 247/360 (69%), Gaps = 15/360 (4%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || | ||| | |||||| ||||| || || |||| ||| ||||||| || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 181159 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 181160 CATCAT-----CTCTGGTGCAGTTGTTCCATCTTCCAAC----GCAATTGGTCTTCACTT 181210 || || ||||||||| || |||| | | | | || || || | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 181211 CTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 181270 || || |||||||| ||||| ||||||||||| | || || || ||||||| | Sbjct 5552 TTACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 181271 ACTCGTAGTCTTTCACTTCCTTATCGGCATTTATGCATACATGGGACGTGAATGGGAACT 181330 || | || | |||||| | | || | | || ||||| ||||| |||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 614527051462080