Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq1065 491 7e-134 seq7681 401 9e-107 seq21 284 2e-71 seq46 212 9e-50 seq9200 176 7e-39 seq581 170 3e-37 >seq1065 Length=3091 Score = 491 bits (544), Expect = 7e-134 Identities = 718/1010 (71%), Gaps = 4/1010 (0%) Strand=Plus/Minus Query 175853 TGATATTTTGGAAGACTGGCTTCTCAGAGATAGGTTTATCTTTATTGGCTGGTCTGGATT 175912 ||||||| |||| |||||| | | ||||| | || | ||| | || |||||||| | Sbjct 2438 TGATATTATGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCT 2379 Query 175913 ACTACTTCTTCCCACTGCTTATCTTGCCATTGGCGGCTGGCTTACTGGCACAACTTTTGT 175972 | | || |||| ||||||| | || | || || ||| |||| || || |||||||| Sbjct 2378 ATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGT 2319 Query 175973 CACGAGTTGGTACACCCATGGTCTTGCTTCTTCCTATCTTGAGGG-TGCTAACTTTCTCA 176031 || |||||| |||||||| | ||| ||||||| | || || ||| || || | | Sbjct 2318 AACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGC-AATTTCTTAA 2260 Query 176032 CAGCGGCTGTCTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTC 176091 | ||||| || || || |||||| || | | | || ||| | | ||||| ||||| | Sbjct 2259 CGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGAC 2200 Query 176092 CTGAATCTCAGGGCGACTTCCAGCGGTGGCTCCAACTTGGAGGGCTTTGGTCCTTTGTTG 176151 | ||| | || || || || || ||| ||| | || || || ||| | ||||| | Sbjct 2199 CAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCG 2140 Query 176152 CTCTCCACGGTGCCTTCGCTCTGATTGGATTCATGCTTCGTCAGTTTGAACTGGCAAGAC 176211 ||||||| || || || || || || || |||||| | ||||| |||||||| || | Sbjct 2139 CTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGT 2080 Query 176212 TCATTGGTATCCGTCCCTACAACGCTATTGCATTCAGTGGTCCTATCGCTGTATTTGTCA 176271 || | | || || || || ||| ||||| |||||| ||||| || ||||| Sbjct 2079 CTGTTCAATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTT 2020 Query 176272 GTGTGTTTCTTCTATACCCACTAGGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTG 176331 || || ||| | || ||||| || |||||| ||||||||||| || ||||| | Sbjct 2019 CCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCG 1960 Query 176332 TGGCAGCAATCTTTAGATTCCTATTGTTTCTTC-AGGGTTTCCACAACTGGACACTGAAC 176390 | ||||| || ||| ||||| | | ||||||| | || || || || ||||| ||||| Sbjct 1959 TAGCAGCTATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAAC 1901 Query 176391 CCCTTCCATATGATGGGAGTTGCTGGTATACTAGGTGGAGCACTACTATCTGCAATCCAT 176450 ||||| ||||||||||||||||| || || |||| | || || |||| || || ||| Sbjct 1900 CCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCAT 1841 Query 176451 GGCGTTACTGTTGAAAATACCCTATATGAAGATGGAGAACAGAACAACACCTTCACTGCG 176510 || | |||||| ||||| || |||| |||||||| || || |||||| || Sbjct 1840 GGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCT 1781 Query 176511 TTCGATTCCACGCAGGAGGAAGAGACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCG 176570 || | | || || | |||||| || ||||| ||||||||||| |||||||| ||||| Sbjct 1780 TTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCC 1721 Query 176571 CAAATCTTCGGGGTTGCGTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTC 176630 |||||||| || ||||| ||| ||||| |||||| | || ||||||||| | ||||| Sbjct 1720 CAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTA 1661 Query 176631 CCTGTCATGGGTCTTTGGGTCTCAAGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGT 176690 || |||| ||| | ||| | ||||||| | |||| || ||||| || || ||| Sbjct 1660 CCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGT 1601 Query 176691 GCTTATGATTTTGTGAGCCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTC 176750 || ||||| || || ||| || || | ||||| ||||||||||| ||||| |||||| Sbjct 1600 GCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTC 1541 Query 176751 TACACAAAGAACATCCTTCTTAACGAAGGACTAAGAGCATGGATGGCACCTGTGGATCAA 176810 ||||| || || |||||| | ||||| || | | || ||||||||| || |||||| Sbjct 1540 TACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAG 1481 Query 176811 CCACATGAGTCATTTGTATTCCCAGAAGAAGTTCTACCTAGAGGTAACGC 176860 || ||||| || ||||||| || || |||||||| | || ||||| Sbjct 1480 CCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 1431 >seq7681 Length=829 Score = 401 bits (444), Expect = 9e-107 Identities = 456/612 (75%), Gaps = 0/612 (0%) Strand=Plus/Plus Query 174842 TTGGATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTA 174901 |||||| ||| ||||| || || || |||||||| ||| | || || ||| | | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 174902 TCCTTTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAA 174961 ||| | |||||||| ||||| || | ||||| || || |||||||| || ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 174962 CTACATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGG 175021 || ||| | || ||||| ||||| || |||||| | ||||| || || |||||||| || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 175022 AGTCGCAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTC 175081 || || ||||| ||||| ||||| | ||| || ||||||||||| | || ||||| Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 175082 TTCACTTGTCCGTGAGACAACTGAAACTGAGTCACAGAACTATGGTTACAAGTTCGGCCA 175141 | | || | || || ||||||| ||| || || | |||||||| || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 175142 AGAAGAAGAGACCTATAACATCGTGGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCA 175201 ||| |||||||| |||||||| ||||| || || || || || ||||| || |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 175202 ATACGCTTCATTCAACAACTCACGCTCACTCCACTTCTTCTTAGCCGCATGGCCAGTTGT 175261 ||| ||| ||||||||||| || || | ||||||||||| || || ||||| || || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 175262 GGGTATCTGGTTCACCGCACTTGGTGTTTCCACAATGGCATTCAACCTCAATGGTTTCAA 175321 || ||||||||||| || | ||| || || |||||||||||||| ||||||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 175322 CTTCAACCAGTCTGTTATCGACGGACAAGGTAGAGTATTGAACACCTGGGCGGATGTTCT 175381 |||||||| ||||| | || | |||||| | || | || || ||||| ||| | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 175382 TAACAGAGCTGGTCTTGGGATGGAAGTAATGCATGAGAGAAATGCACACAACTTCCCACT 175441 ||| | ||| |||||| |||||||||||||| || | ||||| ||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 175442 AGATTTGGCAGC 175453 ||| || || || Sbjct 601 AGACTTAGCTGC 612 >seq21 Length=3603864 Score = 284 bits (314), Expect = 2e-71 Identities = 443/628 (71%), Gaps = 4/628 (1%) Strand=Plus/Plus Query 174488 AACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGC 174547 |||||| ||| |||||||| | | ||||| |||||| | ||||| ||||| || || | Sbjct 2753421 AACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGAC 2753479 Query 174548 CGCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAA 174606 |||||| | || || |||||||| ||| | | ||||| ||||| || || || || | Sbjct 2753480 TGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTA 2753538 Query 174607 TCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTG 174666 | ||||| || || |||||| | || ||||||||||| || ||||||||||| || Sbjct 2753539 TTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTA 2753598 Query 174667 TTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCG 174726 ||||| ||| || ||| | | || || |||||| | || ||||| || | | Sbjct 2753599 TTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTG 2753658 Query 174727 ACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTA 174786 | |||||| | ||||| |||||||||| | ||| |||| | |||||| | ||||| Sbjct 2753659 ATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTG 2753718 Query 174787 TCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGA 174846 | |||||||| ||||| |||||||| || |||| |||||| | ||||||| Sbjct 2753719 TAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGA 2753778 Query 174847 TCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTT 174906 | ||| || || || | || |||||||| ||| |||| | ||| | |||| ||| Sbjct 2753779 TTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTA 2753838 Query 174907 TCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTACA 174966 |||||||| || || | | ||| | || || |||||||| || ||||||| | Sbjct 2753839 CTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTA 2753898 Query 174967 TGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTCG 175026 || | || ||||| ||| | || |||||| | | ||| || || ||||| || || || | Sbjct 2753899 TGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAG 2753958 Query 175027 CAGGTGTCTTCGGTGGTTCATTGTTCTCAGCGATGCATGGTTCACTTGTTACCTCTTCAC 175086 | ||||| ||||| ||||| | ||| || |||||| |||| | || |||||| Sbjct 2753959 CTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAGTTCCTTGGTAACCTCTAGTT 2754017 Query 175087 TTGTCCGTGAGACAACTGAAACTGAGTC 175114 | || | ||||| ||||||||||| || Sbjct 2754018 TGATCAGGGAGACCACTGAAACTGAATC 2754045 >seq46 Length=2187656 Score = 212 bits (234), Expect = 9e-50 Identities = 342/488 (70%), Gaps = 4/488 (1%) Strand=Plus/Minus Query 174547 CCGCAACTGTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAA 174606 |||||||| | ||| |||||||| ||| | | || | ||| | || || || || | Sbjct 1370845 CCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTA 1370787 Query 174607 TCCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTG 174666 | || | || | |||||| | | ||||||||||| || |||||||||| || Sbjct 1370786 TTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTA 1370727 Query 174667 TTCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCG 174726 |||| | || || ||||| | || || |||||||| |||||||| || | || | Sbjct 1370726 TTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTG 1370667 Query 174727 ACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTG-GT 174785 | |||||| | ||||| |||||||||| | ||| |||| | || ||| | ||| || Sbjct 1370666 ATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGT 1370607 Query 174786 ATCTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGG 174845 | || |||||||| |||||||||||||| || || | |||||| |||||| Sbjct 1370606 AGCTTGT--TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGG 1370549 Query 174846 ATCTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCT 174905 || ||| ||||| || || || |||||||| ||| | || || ||| | | || || Sbjct 1370548 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCT 1370489 Query 174906 TTCGGTCAAGGTTCATTCTCAGACGCGATGCCCTTGGGTATCTCTGGAACATTCAACTAC 174965 |||||||||| ||||| || | ||| | || || |||||||| || ||||||| Sbjct 1370488 ATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTT 1370429 Query 174966 ATGTTGGTCTTCCAAGCAGAACATAACATCTTGATGCACCCCTTCCACATGTTGGGAGTC 175025 ||| | || ||| | | ||| || |||||| | ||||| || || |||||||| || || Sbjct 1370428 ATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTA 1370369 Query 175026 GCAGGTGT 175033 || ||||| Sbjct 1370368 GCTGGTGT 1370361 >seq9200 Length=658 Score = 176 bits (194), Expect = 7e-39 Identities = 208/279 (75%), Gaps = 2/279 (1%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | |||||||||||| |||| ||||| |||||| | ||||| ||||| || || || Sbjct 374 ACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 433 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | || || |||||||| ||| | | || || ||||| || || || || || Sbjct 434 GCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTAT 492 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || ||||||| | | ||||||||||| || ||||||||||| || | Sbjct 493 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 552 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || ||||| | || || |||||||| |||||||| || | | || Sbjct 553 TCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 612 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGT 174766 |||||| | ||||| |||||||||| | ||| |||| Sbjct 613 TGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGT 651 >seq581 Length=5673 Score = 170 bits (188), Expect = 3e-37 Identities = 243/339 (72%), Gaps = 15/339 (4%) Strand=Plus/Plus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| |||||||||||| | ||||| ||||| || || || Sbjct 5334 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 5393 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || |||||||||||| | | ||| || ||||| || || || || || Sbjct 5394 GCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 5452 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACA-----ACATCATCTCTGGTGCA 174662 ||||| || || ||||||| | | |||||||||| | || ||||||||||| Sbjct 5453 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCC 5512 Query 174663 GTTGTT----CCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGC 174718 || || |||| ||| || ||||| | ||||| |||| ||||||||| || Sbjct 5513 ATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTTTACC----CTGGGAAGCTGC 5568 Query 174719 CACACTCGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCT 174778 | | || || ||| | ||||| || ||||||| | ||| |||| | |||||| | Sbjct 5569 ATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTT 5628 Query 174779 TATTGGTATCTACGCCTATATGGGACGTGAGTGGGAACT 174817 ||||| | |||||||| |||||||||||||| Sbjct 5629 ACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729822063121680