Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq1065 571 7e-158 seq7681 414 1e-110 seq21 273 3e-68 seq46 262 5e-65 seq9200 154 2e-32 seq581 141 1e-28 >seq1065 Length=3091 Score = 571 bits (632), Expect = 7e-158 Identities = 732/1003 (73%), Gaps = 6/1003 (1%) Strand=Plus/Minus Query 180031 TGGACGACTGGCTTAAACGCGACCGCTTTGTATTTGTGGGCTGGTCTGGACTACTACTTC 180090 ||||||||||| | | | ||||| || || ||||| || |||||||| ||| | || Sbjct 2430 TGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 2371 Query 180091 TTCCCACTGCTTATCTTGCCATTGGCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTT 180150 |||| ||||||| | || | || |||||| |||| || || ||||||| || || Sbjct 2370 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 2311 Query 180151 GGTACACCCACGGTCTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTA-CGGCAGC 180208 |||| ||||| || | ||| ||||||| | ||||| ||| | ||||||| |||| || Sbjct 2310 GGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAA--TTTCTTAACGGCGGC 2253 Query 180209 TGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTC 180268 || || || |||||| | | | | || ||| | | ||||| ||||| || || | Sbjct 2252 GGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAGC 2193 Query 180269 TCAGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCA 180328 || ||| |||| || ||||| ||| | || || || |||| ||| || |||||||| Sbjct 2192 ACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCA 2133 Query 180329 CGGTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGG 180388 || || || || ||||| || || ||| |||| || |||||||| || || | || Sbjct 2132 TGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCTGTTCA 2073 Query 180389 TATCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATT 180448 | | ||||| ||||| ||| ||||||||||||| ||||| || ||||| |||||| Sbjct 2072 ATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCGTATT 2013 Query 180449 TCTCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGC 180508 || || || |||||||| || || ||||||||||||| || |||||| |||||||| Sbjct 2012 CCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGC 1953 Query 180509 AATCTTTAGATTCCTACTCTTTCTTC-AGGGTTTCCACAACTGGACCCTCAACCCCTTCC 180567 || ||| ||||| | || ||||||| | || || || || ||||| | |||||||| | Sbjct 1952 TATATTTCGATTCATCCT-TTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTC 1894 Query 180568 ATATGATGGGAGTTGCTGGTATACTAGGTGGAGCATTGCTATCAGCAATCCATGGCGTAA 180627 |||||||||||||||| || || |||| | || |||||| || || ||||| | | Sbjct 1893 ATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCTA 1834 Query 180628 CTGTGGAGAACACACTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGCATTTGATT 180687 |||| || ||||| || | |||||||| || || || ||||| || ||| | Sbjct 1833 CTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTAACC 1774 Query 180688 CAACGCAAGAGGAGGAAACTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 180747 |||| |||| ||| |||||||| || ||||| ||||| |||||||| ||||| || |||| Sbjct 1773 CAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCT 1714 Query 180748 TCGGTATTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 180807 | ||| |||| ||||| || || || ||| | ||||| || ||| | ||||| || || | Sbjct 1713 TTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCA 1654 Query 180808 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACG 180867 ||| |||||| |||||||| | |||| || ||||| ||||| ||||| || | Sbjct 1653 CCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATG 1594 Query 180868 ATTTCGTGAGTCAAGAGATCAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCTACACCA 180927 | ||||| || || ||| | ||||| ||||||||||| || ||||| |||||||||| Sbjct 1593 ACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCA 1534 Query 180928 AGAACATCCTATTGAATGAAGGACTACGTGCATGGTTGGCACCTGCCGATCAACCACACG 180987 | || ||||| || || || || | ||||| ||| ||||| || ||||| || || | Sbjct 1533 AAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATG 1474 Query 180988 AAAACTTCATCTTCCCTGAAGAAGTTCTACCAAGAGGTAACGC 181030 |||| | || |||||||| || ||||||||| | || ||||| Sbjct 1473 AAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 1431 >seq7681 Length=829 Score = 414 bits (458), Expect = 1e-110 Identities = 461/613 (75%), Gaps = 2/613 (0%) Strand=Plus/Plus Query 179236 TGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTAT 179295 ||||| ||||||||| || || || || || ||||| | ||| || ||| | | || Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 179296 CCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAAC 179355 ||| | |||||||| ||||||||||| ||||||| | || |||||||||||||| ||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 179356 TACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGT 179415 | ||| |||||||||| ||||| ||||||||||||||||| || || || ||| | ||| Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 179416 GTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTCTCGTTACTTCC 179475 || ||||| |||||||| || || || ||| ||||||||| || | || || || Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC- 240 Query 179476 TCGCTTGTTC-GTGAAACAACTGAGACAGAGTCACAGAACTATGGTTATAAGTTCGGACA 179534 | | ||| || | ||||| ||||| | || || || | ||||| || || || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 179535 AGAAGAAGAGACCTATAACATCGTCGCAGCACATGGCTACTTCGGTCGTTTGATCTTCCA 179594 ||| |||||||| |||||||| || || || || || || || ||||| || |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 179595 ATATGCATCCTTTAACAACTCACGCTCTTTGCACTTCTTCCTTGCTGCGTGGCCGGTTGT 179654 |||||| || |||||||| || ||||| ||||||||| | ||||| ||||| || || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 179655 CGGCATCTGGTTCACTGCTCTTGGCGTGTCAACCATGGCGTTCAACCTCAACGGTTTCAA 179714 || ||||||||||||||| | || | || ||||| |||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 179715 CTTCAACCAGTCCATCCTTGACGGTCAAGGACGTGTCCTTAACACATGGGCGGACGTATT 179774 |||||||| || | |||| | ||||| || || |||| || ||||| || | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 179775 GAACCGTGCAGGTTTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACT 179834 |||||||| | | ||||||||||| ||||| || ||||| || ||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 179835 CGACCTTGCTGCT 179847 ||| | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 273 bits (302), Expect = 3e-68 Identities = 422/597 (71%), Gaps = 4/597 (1%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | | | |||| ||||| ||| || | || | | ||||| ||||| || Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | |||||||| || || || || | || ||| | ||||| || Sbjct 2753460 ATGATCCCTACCTTATTGACTGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCC 2753518 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || |||||| | || ||||||||||| Sbjct 2753519 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAA 2753578 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || ||||||||||| || | || ||| || || | | || || ||||| | Sbjct 2753579 TATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACT 2753638 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 || ||||| |||| | ||||| ||| | || || |||||||||| | || | || Sbjct 2753639 TTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGT 2753698 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | |||||||| ||||| ||||||||| || | Sbjct 2753699 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATG 2753758 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 | | ||||||||||| ||||| |||||| || || | || || || ||||| | || Sbjct 2753759 TTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGC 2753818 Query 179280 AGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTAT 179339 | ||| | |||| ||| |||||||| ||| ||| ||| |||| || | || || Sbjct 2753819 TATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAAT 2753878 Query 179340 CTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCC 179399 |||||||||||| |||| ||| |||||||||| ||| | ||||||||||||| ||| || Sbjct 2753879 CTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCC 2753938 Query 179400 GTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTTTTCTCTGCTATGCA 179456 || || || | ||||| ||||| |||||||| || || || ||| ||||||||| Sbjct 2753939 ATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCA 2753994 >seq46 Length=2187656 Score = 262 bits (290), Expect = 5e-65 Identities = 360/498 (72%), Gaps = 4/498 (1%) Strand=Plus/Minus Query 178942 GCAACTATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCATC 179001 |||||| || ||| || | || ||| | ||||| | ||| | |||||||| || || Sbjct 1370843 GCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATT 1370785 Query 179002 CGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTC 179061 || | || | |||||| | | ||||||||||| || |||||||||| || | Sbjct 1370784 CGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATT 1370725 Query 179062 CCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGAT 179121 |||| || || || || | || || ||||| || |||||||| ||||| || ||| Sbjct 1370724 CCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGAT 1370665 Query 179122 GAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCG-GCAT 179180 || ||| | || || |||||||||| | || | || | || ||| | | | | | Sbjct 1370664 GAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAG 1370605 Query 179181 CTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGAT 179240 || || |||||||| ||||||||||||||| || | |||| ||||||| ||| ||||| Sbjct 1370604 CT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGAT 1370547 Query 179241 CTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTT 179300 ||||||||| || || || || || ||||| | ||| || ||| | | || || | Sbjct 1370546 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTAT 1370487 Query 179301 CGGTCAAGGTTCTTTCTCTGATGCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACAT 179360 ||||||||| ||||||||||| |||| || | || |||||||||||||| |||| || Sbjct 1370486 CGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTAT 1370427 Query 179361 GCTTGTATTCCAAGCAGAACACAACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGC 179420 | |||||||| | | ||| ||||||||||||||||| || || || ||| | ||||| || Sbjct 1370426 GATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 1370367 Query 179421 TGGGGTATTCGGTGGATC 179438 ||| ||| |||| ||| Sbjct 1370366 TGGTGTAGCTGGTGCATC 1370349 >seq9200 Length=658 Score = 154 bits (170), Expect = 2e-32 Identities = 208/287 (72%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| |||| | |||||| | || | || ||||| ||||| || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| || || || || | || ||| | ||||| || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCCC 471 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | ||||||||||| Sbjct 472 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 531 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || ||||||||||| || | || | ||| || || || | || || ||||| || Sbjct 532 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAAT 591 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTT 179146 |||||||| ||||| | ||||| ||| | || || |||||||||| Sbjct 592 TTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 141 bits (156), Expect = 1e-28 Identities = 250/361 (69%), Gaps = 15/361 (4%) Strand=Plus/Plus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| |||| | || ||| | || | || ||||||||||| || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | |||||| | || || || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACA- 179038 ||| || |||||||| || || ||||| || || ||||||| | | |||||||||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 179039 ----ACATCATCTCTGGTGCTGTT----GTCCCAAGTTCAAACGCAATTGGTCTACACTT 179090 | || ||||||||||| || | || | ||| || || || | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 179091 CTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCA 179150 |||| ||||||||| ||||| | ||||||||| | || || || ||||||| | Sbjct 5552 TTACC----CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 179151 ACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACT 179210 || | || | |||||| | | || | | |||||||| |||||||||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Query 179211 T 179211 | Sbjct 5668 T 5668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610239683191680