Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq16 109 5e-19 seq4152 105 6e-18 seq68 104 2e-17 seq8 89.7 4e-13 seq45 86.0 5e-12 >seq16 Length=4050460 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 2369221 GCCGCCGCGGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 2369280 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | ||||| |||| |||||||| || || ||| | ||||| ||||| || |||||||| Sbjct 2369281 GAGCGTGCGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGG 2369340 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 2369341 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 2369400 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 2369401 CTCCAGCGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 2369448 >seq4152 Length=1438 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||| || | || || || || || || ||||||||| Sbjct 337 GCCGCCGCGGAGGCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGC 396 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | |||| |||| || ||||| ||||||||| | || || ||||| || |||||||| Sbjct 397 GAGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGG 456 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| |||| | | || | ||||| | || || || Sbjct 457 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGGACTCCAC 516 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || ||||| ||||| ||||| Sbjct 517 CTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 564 >seq68 Length=1664768 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | ||||| || || ||||| |||||||| || | |||| | || || Sbjct 547891 ACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCC 547832 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| ||||| || |||| |||||||| || ||||| || | ||||| || || | Sbjct 547831 AGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 547772 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| |||| | | || | ||||| | | || ||||||| || || | ||| Sbjct 547771 ATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTG 547712 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || ||||||||||| |||||| Sbjct 547711 CCAGTAAGCGTCTTCACAAAGATCTGCATA 547682 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | |||| |||| || || || || || Sbjct 547195 GTCGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTGCGGCCGTCCTCCAGTTGCTTGCCA 547136 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| |||||||| || | ||||| || || ||||||| || Sbjct 547135 GCAAAGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 547076 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 547075 ACGTTGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTC 547016 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 547015 TTCACGAAGATCTGCAT 546999 >seq8 Length=5380884 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| || || |||| |||| || ||||| || || Sbjct 979420 GTGGACTCCTTCTGGATGTTGTAGTCAG-CAAGTGTGCGGCCGTCCTCAAGCTGCTTCCC 979478 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 979479 AGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 979538 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | || ||||| || || || || | ||||| || || || Sbjct 979539 GACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGTGAGGGT 979598 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||| ||||| ||||| Sbjct 979599 CTTCACGAAGATCTGCAT 979616 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| || | |||| | || || ||||| || || Sbjct 978508 GTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACCATCCTCAAGCTGCTTGCCA 978567 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| ||| Sbjct 978568 GCGAAGATGAGACGCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 978627 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || || Sbjct 978628 ACGTTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGTGATGGTCTTGCCGGTAAGGGTC 978687 Query 27231 TTCACAAAGATTTGCATA 27248 ||||||||||| |||||| Sbjct 978688 TTCACAAAGATCTGCATA 978705 >seq45 Length=2202424 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || ||||| |||||||| | |||| | || || ||||| || || Sbjct 1623437 GTGGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTGCGGCCATCCTCCAGCTGCTTCCCT 1623378 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||||||||| || ||||| || | ||| || || || ||||||| ||| Sbjct 1623377 GCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTC 1623318 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | ||||| || || || || | ||||| |||| || Sbjct 1623317 ACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCTTGCCAGTCAAGGTC 1623258 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1623257 TTCACAAAGATCTGCAT 1623241 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| | | | || |||| || ||||| || || Sbjct 1622753 GTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGCTTGCCA 1622694 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || ||||||| || Sbjct 1622693 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 1622634 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | ||| || || || || || | || || || || || Sbjct 1622633 ACGTTGTCGATTGTGTCAGATGATTCCACCTCAAGGGTGATGGTCTTACCGGTGAGGGTC 1622574 Query 27231 TTCACAAAGATTTGCATA 27248 || |||||||| |||||| Sbjct 1622573 TTGACAAAGATCTGCATA 1622556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424873361626032