Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq68 111 2e-19 seq8 109 7e-19 seq49 84.2 3e-11 >seq68 Length=1664768 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| || || ||| | ||||| | || |||||||| || Sbjct 281289 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 281348 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | || || || | ||||| ||||||||||| || | | |||||| | Sbjct 281349 ATAACAATTATTCCGGTGTTTCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTGAGG 281408 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || || || || ||||||||| | | ||||| | | ||| | || |||||| Sbjct 281409 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCGCA 281468 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || || || || || ||| || ||| | | ||| ||||| Sbjct 281469 TCAATTTCATCAACAAACACTATGCAAGGGGCATTCTCCTTGGCCTTCTTAAACAGATCA 281528 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 || |||| |||||| ||||| ||||||||||||||||| Sbjct 281529 CGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAA 281569 Score = 109 bits (120), Expect = 7e-19 Identities = 216/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 ||||||| ||||| |||||||| | || ||||| || || || |||||||| ||| | Sbjct 1477694 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 1477753 Query 11598 G-CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | ||||||| || ||| | || || |||||||||||||||||||||||||| Sbjct 1477754 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 1477812 Query 11657 CATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCA 11716 || || || | || | || ||||| || | ||||| ||||| ||||| Sbjct 1477813 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 1477872 Query 11717 ACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACCC 11776 ||||| | ||| || || | | ||| | ||| || ||| || || | || || Sbjct 1477873 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 1477932 Query 11777 GCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCT 11836 | || ||| ||||||||||| || || || || || || || |||| ||| || Sbjct 1477933 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 1477992 Query 11837 CGGGGGATCTTGGCACC 11853 ||||||||||| || Sbjct 1477993 TTTGGGATCTTGGCTCC 1478009 >seq8 Length=5380884 Score = 109 bits (120), Expect = 7e-19 Identities = 217/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 ||||||| |||||||| || || | || ||||| || || || ||||| || ||| | Sbjct 175445 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 175388 Query 11598 GCATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGA 11651 ||||||| |||| || ||| | || || || || |||||||||||||||| Sbjct 175387 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 175332 Query 11652 CAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 |||| || || || | ||| | || ||||| || | ||||| ||||| | Sbjct 175331 CAATGCACGGCGCCTTGGCCTTGGCCTTCTCGAAGAGGTCCCTGACCCTGGATGCACCGA 175272 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 |||| ||||| | ||| || || | | ||||| ||| || ||| || || | | Sbjct 175271 CACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCGGCCT 175212 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 | || |||| ||| || || ||||| || || || || || ||| ||| |||| ||| Sbjct 175211 CCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGGAGGC 175152 Query 11832 CGCCTCGGGGGATCTTGGCACC 11853 || |||||||||||| || Sbjct 175151 ATCCCTTGGGGATCTTGGCTCC 175130 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/251 (68%), Gaps = 12/251 (5%) Strand=Plus/Minus Query 11489 ATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAAGCCATCC 11548 ||||| | || || ||||| |||||||| | || ||||| | ||||| |||||| Sbjct 1265101 ATATCAGCTCGGTTGGTGGCAGCAATAACAATTATTCCAGTGTTCCCTTCAAAACCATCC 1265042 Query 11549 ATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCATACCACC- 11607 |||||||| | | || || | || || || || ||||||||| | |||||| Sbjct 1265041 ATCTCGGTCAAAAGCTGGTTCAGGGTCTGCTCCCTTTCATCATTTCC------ACCACCG 1264988 Query 11608 --AGCACTGCGT---TGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACATGGT 11662 | || | | | ||| | || || |||||||| ||||||| || || || || ||| Sbjct 1264987 ATACCAGTTCCTCTCTGCCTTCCAACAGCATCAATTTCATCAACAAACACTATGCAAGGT 1264928 Query 11663 TGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACAAAC 11722 ||| || ||| | | ||| ||||| || || | ||||| ||||| |||||| Sbjct 1264927 GCATTCTCCTTGGCCTTCTTAAACAGATCACGGACACGGGATGCACCAACACCGACAAAC 1264868 Query 11723 ATCTCCACAAA 11733 |||||||| || Sbjct 1264867 ATCTCCACGAA 1264857 >seq49 Length=2122476 Score = 84.2 bits (92), Expect = 3e-11 Identities = 159/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Plus Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 || ||| || || || |||||||||||||| || ||||||| || || | ||| | Sbjct 612497 CACCTGGGGCCTGGGAGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCG 612556 Query 111997 TTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGAT 112056 || |||||| | |||||| | | | |||| |||||||| ||| ||| || || | Sbjct 612557 CTGAGACATCAGATGGTATGTTTTGATGGCAGATTCAATGTCATCCTTGTGTATCCCCAC 612616 Query 112057 TGCGACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAG 112116 || || | ||| ||||||| ||||| |||| | | | ||| | ||| || ||| Sbjct 612617 TGAAACTCTCATTAACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGC--TTCAAG 612674 Query 112117 A--TAGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | || | |||| || || |||| |||||||| || |||| |||||| Sbjct 612675 AGGTAAGACCTCTCCAGAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCC 612726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627939475185600