Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq131 129 7e-25 seq93 125 9e-24 seq68 109 7e-19 seq143 105 8e-18 seq49 91.5 2e-13 seq8 82.4 9e-11 >seq131 Length=616296 Score = 129 bits (142), Expect = 7e-25 Identities = 307/453 (68%), Gaps = 12/453 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| || | || | ||| |||||| Sbjct 272440 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCATC 272499 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| ||| | || | || | | |||| || || || || Sbjct 272500 CAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGTGCCCCAAAGCCATT-AGCAGGCG 272558 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 || | |||| |||| | ||||| ||| | || |||||| |||| ||| || Sbjct 272559 GTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGCGCA 272618 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGTG 129966 || |||||||| ||| |||| | ||| ||||| || || || ||||| || | Sbjct 272619 GGGAAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGCG 272678 Query 129967 AATG---GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTTGAAGAGTTCCACGGCAAAC 130021 | | | ||| || |||| | | ||| | | ||| | ||| | ||| | || Sbjct 272679 GACGCGGGACTC-GT-CCAGCTTGAC-GCGGAGGAGGTCGTAGAGAAGGC-ACG-CGAAG 272733 Query 130022 TCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 130081 || ||| || |||||||| ||||||||||| || || |||||| || || |||||| Sbjct 272734 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATG 272793 Query 130082 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 130141 || || || ||||| | |||||| || || || || ||||| |||||||| || ||||| Sbjct 272794 AGCCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAACGAGCCCGAGAAGAAAATGCCCTCG 272853 Query 130142 ACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || |||||||| | |||||||| || ||| Sbjct 272854 ACGCAGGCGAACGCGACAAGACGCTCGGCGAAG 272886 >seq93 Length=1192474 Score = 125 bits (138), Expect = 9e-24 Identities = 309/455 (68%), Gaps = 14/455 (3%) Strand=Plus/Plus Query 129727 ATAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 129786 ||| || || || ||||||||||||||||| ||||| || | | | |||| |||||| Sbjct 324927 ATACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCAT 324986 Query 129787 AAAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 | || || ||||| ||| | || | || | ||| | |||| || | Sbjct 324987 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGTGGCCCAG-CGCCATGAGCAGGC 325045 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||| ||||||| | ||| | || |||||| |||| || | Sbjct 325046 GGTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGC 325105 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | ||||||||||| ||| |||| | ||| || || || || || || || || Sbjct 325106 AGGGGAGCGCGTCGCAGACGAACTCGCGCTCTATATCGACGGCGTCGGCGACTATCTCGC 325165 Query 129966 GAATG---GTCTCCGTGCCAGGTCTATTGCGCA-AAG-TCTT-GAAGAGTTCCACGGCAA 130019 | | | | ||| || | || | | ||| | ||| || | || ||| |||| ||| Sbjct 325166 GGACGCGCGACTC-GT-CGAGCTTGAC-GCGGAGAAGATCATAGAGGAGG--CACG-CAA 325219 Query 130020 ACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 130079 | || ||| ||||||||||| ||||||||||| || || ||||| || || |||| Sbjct 325220 AGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGGCCCGGCA 325279 Query 130080 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 130139 |||| || || ||||| | |||||| || || || || || || || |||||||| |||| Sbjct 325280 TGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAGATGCCCT 325339 Query 130140 CCACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 | || || |||||||| | ||| ||||| || ||| Sbjct 325340 CGACGCAGGCGAACGCGACGAGCCGCTCGGCGAAG 325374 >seq68 Length=1664768 Score = 109 bits (120), Expect = 7e-19 Identities = 322/489 (66%), Gaps = 8/489 (2%) Strand=Plus/Plus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || || || || | |||||| ||||| || || || Sbjct 281289 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 281348 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || |||| || || || | ||||| ||||||||||||||||| |||||||||| | Sbjct 281349 ATAACAATTATTCCGGTGTTTCCCTCAAAACCATCCATCTCAGTCAAAAGTTGATTGAGG 281408 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 14245 || || || | ||||||||| || | ||| | | | ||| | || || || Sbjct 281409 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCGCA 281468 Query 14246 TCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGATAT 14303 ||||||||||| | || || || || || ||| || ||| |||| ||| | || Sbjct 281469 TCAATTTCATCAACAAACACTATGCAAGGGGCATTCTCCTTGGC--CTTCTTAAACAGAT 281526 Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363 | || || | |||||| ||||| ||||||||||||||||| | | | | | || Sbjct 281527 CACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATATA 281585 Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422 | || ||| || || || ||| || || || ||| ||| || | ||||| || ||| Sbjct 281586 GAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAGTC 281645 Query 14423 CCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACC-ACTGCCAAAGTAGCG 14481 || || || | || ||| |||| || || | ||||| || | || | | | Sbjct 281646 CCAGGAGGACCAACAAGCAGGACACCTTTAGGAATGCGAGCACCGACAG-CAGTGAACCT 281704 Query 14482 TTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGCGTCGATGCC 14541 |||||||| || | ||| || |||| ||| || || | |||||| | |||| || Sbjct 281705 TTCAGGTTTCTTCAAGAACTCAACGACTTCCATGAAGTCTTGCTTCGCTTCATCGACACC 281764 Query 14542 TTCAACGTC 14550 |||| || Sbjct 281765 AGCAACATC 281773 >seq143 Length=511882 Score = 105 bits (116), Expect = 8e-18 Identities = 368/568 (65%), Gaps = 10/568 (2%) Strand=Plus/Minus Query 13865 GTGAT-CGTTCCGTCGCCGTCACGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGC 13923 ||||| || ||| | |||| ||| | ||| ||||||| ||| || | |||||| || Sbjct 287908 GTGATGCGGTCCTT-GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTAGC 287850 Query 13924 CAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTC 13983 | |||||| || ||| || | ||| || | || | | | || ||| ||| Sbjct 287849 GAGGTCGGCGCCGCTGAACCCGGGCGTGCGCATGGCCACCACATTGAGGGACACGTCGGG 287790 Query 13984 AGCCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGG 14042 ||| |||||||| | | || ||| || | |||| ||| || |||||||| | Sbjct 287789 GTCCAGCTTCTTGT-TGGAGCAGTGCACCTTGAGGATCTCCTCACGGCCGCGCACGTCAG 287731 Query 14043 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 14102 | || ||| ||| || || || ||||| || |||||||| || ||| |||| |||| Sbjct 287730 GGAGCCCGACGCTGACCTGCCGGTCGAAGCGCCCCGGGCGGAGCAGCGCGGCGTCGAGGA 287671 Query 14103 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 14162 | || ||||| || || || || || | | ||| | ||| | || || |||| Sbjct 287670 TGTCCGGCCGGTTAGTGGCGGCAATCACGATCACGCCGCTGTCGCCCGCGAACCCGTCCA 287611 Query 14163 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---C 14219 |||| |||| || || |||| || || || || ||||||||| | | ||| | Sbjct 287610 TCTCCGTCAGCAGCTGGTTGAGTGTCTGCTCCCGCTCATCATTCCC---CCCACCGATGC 287554 Query 14220 CCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGAT 14279 | | | ||| ||| | ||||||||||| || || |||||||| |||| || || | Sbjct 287553 CGGTGCCGCGCTGCCTGCCGACGGCGTCGATCTCGTCGATGAACACGAGGCACGGCGCGT 287494 Query 14280 TTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCT 14339 | | ||| | || | || ||||| | | || || || || || ||||||| Sbjct 287493 TGGCCTTGGCCTTGTTGAACAGGTCGCGCACCCGCGACGCGCCCACGCCGACGAACATCT 287434 Query 14340 CCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTC 14399 | | || | | |||| || |||||| || | |||||||||||||| Sbjct 287433 CGATGAACTCCGACCCGGAGAGGGAGAAGAAGGGCACCCCCGCCTCACCCGCGATGGCCT 287374 Query 14400 GGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || |||||||||||||| || Sbjct 287373 TCGCCAGAAGCGTCTTCCCCGTCCCCGG 287346 >seq49 Length=2122476 Score = 91.5 bits (100), Expect = 2e-13 Identities = 352/545 (65%), Gaps = 6/545 (1%) Strand=Plus/Plus Query 13886 CGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGCCAAGTCGGCACCAGAGAAGCCC 13945 ||| | ||| | ||||| ||| || | ||| || || | |||||| || ||| || Sbjct 1962239 CGGCCGGCGAGAATGGCGGCCTCGTTCATGAGATTGGCGAGGTCGGCGCCGCTGAACCCG 1962298 Query 13946 GTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTCAGCCAACTTCTTGTCTCGGGC- 14004 | ||| || | || | ||| || ||| ||| ||| |||||||| ||| || Sbjct 1962299 GGCGTGCGCATGGCCACCACGTTGAGGGACACGTCGGGGTCCAGCTTCTTGT-TCGAGCA 1962357 Query 14005 GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGGGTAGGGACACGGTGATCTTACG 14064 ||| || | |||| |||||| |||||||| || || ||| ||| || || Sbjct 1962358 GTGCACCTTGAGGATCTCCTCGCGGCCGCGCACGTCAGGAAGCCCGACGCTGACCTGCCG 1962417 Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 || ||||| || |||||||| || || |||| ||||| || |||||| || || || Sbjct 1962418 GTCGAAGCGCCCCGGGCGGAGCAGCGCCGCGTCGAGGATGTCCGGGCGGTTGGTGGCGGC 1962477 Query 14125 GATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGAT 14184 | || | | ||| | || | || || |||||||| |||| || || |||| Sbjct 1962478 AAGTACGATCACGCCGCTGTCTCCGGCGAACCCGTCCATCTCCGTCAGAAGCTGGTTGAG 1962537 Query 14185 GGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGG 14243 || || || || || || || | | || | |||| | ||| ||| | ||||||| Sbjct 1962538 CGTCTGCTCCCGCTCGTCGTTACCCCCGCCGATG-CCCGTGCCGCGCTGCCTCCCGACGG 1962596 Query 14244 CGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATAT 14303 |||| || || ||||||||||| | || || || || ||| | || | | Sbjct 1962597 CGTCGATCTCGTCGATGAAAACAAGGCACGGCGCGTTGTCCTTGGCCTTGTTGAACAGGT 1962656 Query 14304 CTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGAACATT 14363 | ||||| | | || || || || || |||||||| | || | || ||| ||| Sbjct 1962657 CGCGCACCCGCGACGCGCCCACGCCGACGAACATCTCGATGAACTCGGACCCGG-ACAGC 1962715 Query 14364 G-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTC 14422 | || ||| || || | || ||||||||||| || || || |||||||| ||| Sbjct 1962716 GAGAAGAACGGCACCCCTGCCTCCCCCGCGATGGCCTTCGCCAGAAGCGTCTTCCCGGTC 1962775 Query 14423 CCTGG 14427 || || Sbjct 1962776 CCCGG 1962780 >seq8 Length=5380884 Score = 82.4 bits (90), Expect = 9e-11 Identities = 244/370 (66%), Gaps = 16/370 (4%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || | || ||| | |||||| ||||| || || || Sbjct 1265137 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 1265078 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || |||| || || || | ||||| ||||||||||| ||||| || || || | | Sbjct 1265077 ATAACAATTATTCCAGTGTTCCCTTCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAGG 1265018 Query 14186 GTTTGTTCGCGTTCATCATT---CGCAGGCATACCA--CCCGCACTGCGTTGCTTACCGA 14240 || || || | ||||||||| || |||||| || | |||| || || | Sbjct 1265017 GTCTGCTCCCTTTCATCATTTCCACCACCGATACCAGTTCCTCTCTGCCTT-----CCAA 1264963 Query 14241 CGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAA 14298 | || ||||||||||| | || || || || ||| ||| || ||| |||| ||| Sbjct 1264962 CAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTCCTTGGC--CTTCTTAAA 1264905 Query 14299 GATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCGGA 14358 | ||| || || | ||||| ||||| |||||||||||||| || | | | | | Sbjct 1264904 CAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCCG- 1264846 Query 14359 ACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCC 14417 | || | || ||| || || || ||| || || || || ||| || | ||||| | Sbjct 1264845 ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTTAC 1264786 Query 14418 CCGTCCCTGG 14427 | ||||| || Sbjct 1264785 CGGTCCCAGG 1264776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618344089034160