Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq68 140 4e-28 seq93 131 2e-25 seq131 127 2e-24 seq8 125 8e-24 seq67 84.2 3e-11 >seq68 Length=1664768 Score = 140 bits (154), Expect = 4e-28 Identities = 274/397 (69%), Gaps = 10/397 (3%) Strand=Plus/Plus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| || || ||| | |||||| | || || || || || Sbjct 281289 TCAAAGCGTCCAGGTCTAAGTAGAGCAGAATCCAAAATATCAGCTCGGTTAGTGGCAGCT 281348 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || |||| || || |||||| | |||||||||||||||| ||||||||||| || | Sbjct 281349 ATAACAATTATTCCGGTGTTTCCCT--CAAAACCATCCATCTCAGTCAAAAGTTGATTGA 281406 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9704 || || |||| ||||||||| | | ||||| | | ||| |||| || | Sbjct 281407 GGGTCTGCTCCCTTTCATCATTTCCACCACCAATACCAGTTCCTCTCTGCCTTCCAACCG 281466 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAG 9762 ||||||| ||||||| || || ||||| || ||| || | | | |||| ||| || Sbjct 281467 CATCAATTTCATCAACAAACACTATGCAAGGGGCATTCTC-CTTG-GCCTTCTTAAACAG 281524 Query 9763 ATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACA 9822 ||| || || || ||| || ||||| ||||||||||||||||| | | | | | | Sbjct 281525 ATCACGGACCCGAGAGGCACCAACACCGACAAACATCTCCACAAACTCAGACCCTG-ATA 281583 Query 9823 TTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCG 9881 | | || ||| || || || ||| || ||||| ||| ||| || | ||||||||| | Sbjct 281584 TAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCTTTGGCAAGCAAAGTCTTACCAG 281643 Query 9882 TACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAAT 9918 | || || ||| | || ||| ||||| ||||| Sbjct 281644 TCCCAGGAGGACCAACAAGCAGGACACCTTTAGGAAT 281680 Score = 82.4 bits (90), Expect = 9e-11 Identities = 210/317 (66%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 9612 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9671 |||| || ||||| || || | || |||||||| || || |||| ||||| || | Sbjct 1477694 CAAAGCCGTCCATTTCGGTGAGCAGCTGGTTAATGGTCTGCTCCCTCTCATCGTTTCCAC 1477753 Query 9672 G-CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | ||||||| || ||| | || || ||||||||||||||||||||||| ||| Sbjct 1477754 CACCGAGC-CCAGCACCACGCTGCCTCCCGACAGCATCAATCTCATCAATGAAGACAATG 1477812 Query 9731 CATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 || || || | ||| || ||||| |||| || | || || ||||| Sbjct 1477813 CAAGGCGCCTTGGCCTTAGCCTTCTCGAAGAGGTCCCTGACCCTGGACGCACCGACACCG 1477872 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCC 9850 ||||| | ||| || || | | ||||| || || |||||| || | || || Sbjct 1477873 ACAAAGAGCTCGACGAACTCGGAGGCGGCGCAGGAGAAGAAGGGTACCCCGGCCTCCCCA 1477932 Query 9851 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCT 9910 | | ||| |||||||| || || || || || || || || |||||||| || Sbjct 1477933 GAGACGGCACGGGCGAGGAGTGTTTTGCCTGTCCCAGGTGGGCCGACGAGGAGGCATCCC 1477992 Query 9911 CGTGGAATCTTGGCGCC 9927 ||| |||||||| || Sbjct 1477993 TTTGGGATCTTGGCTCC 1478009 >seq93 Length=1192474 Score = 131 bits (144), Expect = 2e-25 Identities = 125/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| |||||||| || || || || Sbjct 325374 CTTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCGGGATCTTT 325315 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||| || || |||||||| || ||| ||||||||||| Sbjct 325314 CTGCGCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTTCTCCAACGA 325255 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 94956 ||| ||||| || |||||||| || ||| || |||||| Sbjct 325254 GCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCG 325215 >seq131 Length=616296 Score = 127 bits (140), Expect = 2e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| || |||| || || || || ||||| || |||||||| || || || Sbjct 272886 CTTCGCCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTT 272827 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | ||||||||||| || || |||||||| || ||| |||||||||||| Sbjct 272826 CTGCGCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGA 272767 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 272766 GCTCATCTCCCGCGACGAGGGCCTGCAC 272739 >seq8 Length=5380884 Score = 125 bits (138), Expect = 8e-24 Identities = 257/372 (69%), Gaps = 20/372 (5%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | || || | |||||| | || || || || || Sbjct 1265137 TCAAAGCGTCCAGGTCTAAGTAAAGCAGAGTCCAAAATATCAGCTCGGTTGGTGGCAGCA 1265078 Query 9587 ATGACAACAATACCTGT-TTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAAT 9645 || |||| || || || ||| | ||||||||||||||||| |||||||| ||||| | Sbjct 1265077 ATAACAATTATTCCAGTGTTCCCT-TCAAAACCATCCATCTCGGTCAAAAGCTGGTTCAG 1265019 Query 9646 AGTTTGTTCCCGTTCATCATTCGCTGGCATACCACC---AGCACTGCGT---TGCTTTCC 9699 || || |||| ||||||||| | |||||| | || | | | ||| |||| Sbjct 1265018 GGTCTGCTCCCTTTCATCATTTCC------ACCACCGATACCAGTTCCTCTCTGCCTTCC 1264965 Query 9700 CACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--A 9757 || |||||||| ||||||| || || ||||| ||| ||| || | | | |||| | Sbjct 1264964 AACAGCATCAATTTCATCAACAAACACTATGCAAGGTGCATTCTC-CTTG-GCCTTCTTA 1264907 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || ||||| || ||||| || || ||||| |||||||||||||| || | | | | Sbjct 1264906 AACAGATCACGGACACGGGATGCACCAACACCGACAAACATCTCCACGAACTCAGAGCCC 1264847 Query 9818 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9876 | | || | || ||| || || || ||| || ||||| || ||| || | |||||| Sbjct 1264846 G-ATATAGAGAAGAAAGGCACTCCAGCTTCTCCTGCAATTGCCTTGGCAAGCAAAGTCTT 1264788 Query 9877 ACCCGTACCTGG 9888 ||| || || || Sbjct 1264787 ACCGGTCCCAGG 1264776 Score = 87.8 bits (96), Expect = 2e-12 Identities = 217/327 (66%), Gaps = 22/327 (7%) Strand=Plus/Minus Query 9612 CAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG 9671 |||| || |||||||| |||| || |||||||| || || |||| || || || | Sbjct 175445 CAAAGCCGTCCATCTCCGTCAGCAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTTCC-- 175388 Query 9672 GCATACCACCA------GCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGA 9725 ||||||| |||| || ||| | || ||||| || |||||||||||||||| Sbjct 175387 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCAACGGCGTCGATCTCATCAATGAAGA 175332 Query 9726 CGATGCATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCG 9781 | ||||| || ||| || || | || ||||| |||| || | || Sbjct 175331 CAATGCACGGCGCCTTGGCCTTGGCCTTC----TCGAAGAGGTCCCTGACCCTGGATGCA 175276 Query 9782 CCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTA 9841 || ||||| ||||| | ||| || || | | ||| | || || |||||| || Sbjct 175275 CCGACACCGACAAAGAGCTCGACGAACTCGGAGGCAGCGCAGGAGAAGAAGGGCACCCCG 175216 Query 9842 GATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGG 9901 | || || || | ||| || || || ||||| ||||| || || ||| ||| ||||| Sbjct 175215 GCCTCCCCGGCGACGGCACGCGCAAGGAGAGTTTTACCTGTCCCAGGCGGGCCCACGAGG 175156 Query 9902 AGGGCACCTCGT-GGAATCTTGGCGCC 9927 | |||| | | | || |||||||| || Sbjct 175155 A-GGCATCCCTTGGGGATCTTGGCTCC 175130 >seq67 Length=1688621 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 7283 CCACAAAACGAGGAGACACCCTTCTACCCACGCTCGGTCTACGGAGTCTCAAAGGTTGCG 7342 ||||| | |||||| || || ||| |||| |||||| ||||| | | | ||||| || Sbjct 1248545 CCACAGAGCGAGGACACGCCGTTCCACCCGCGCTCGCCCTACGCCGCCGCCAAGGTCGCC 1248604 Query 7343 GCACATTGGCTCGTCAAAAATTACCGCGAGTCTTACGGACTGTTTGCGTGCTCCGGAATC 7402 || || ||| | | || ||||| ||| | ||||| || || || ||| ||| | Sbjct 1248605 GCGCACTGGTACACCGTCAACTACCGAGAGGCGTACGGCCTCTTCGCCTGCAACGGCGTG 1248664 Query 7403 CTCTTCAACCATGAATCACCGAGACGAGGTGCAGACTTTGTCAC 7446 ||||||||||| || |||||| | || |||| |||| ||||| Sbjct 1248665 CTCTTCAACCACGAGTCACCGCGCCGCGGTGAGAACTTCGTCAC 1248708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583174871102640