Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq131 230 3e-55 seq93 210 2e-49 >seq131 Length=616296 Score = 230 bits (254), Expect = 3e-55 Identities = 582/865 (67%), Gaps = 35/865 (4%) Strand=Plus/Minus Query 59573 GTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGA 59632 ||||||| | | |||| | || ||||| ||| | | || |||||| | | |||||| Sbjct 273288 GTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCCTCGTTCTGGACAGCCGAGGA 273229 Query 59633 GATTGACCTCGCCGGAGACCTGAAGGATTGGGACAA---GCTCAATTACGACGAGCAGCA 59689 | | |||||| ||| ||| || | | |||||| |||||| ||||||| || Sbjct 273228 GGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCAACGCGGACGAGCGCCA 273169 Query 59690 TTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATAT 59749 |||||| || || ||||||||||| ||| || || || ||| | || || | Sbjct 273168 CTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCGTCCGACGGCATCGTGCTCGAGAACCT 273109 Query 59750 AGACAT----GAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGT 59805 | | | | | | ||| || |||||| | |||||||| || ||||||||| | Sbjct 273108 GG-CGTCGCGGTTCATGTCC---GACGTCCAGGTCGCCGAGGCGCGCGCGTTCTACGGCT 273053 Query 59806 ATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTG 59864 ||| ||| || ||| |||||||| |||| ||||||||| || | || | | Sbjct 273052 TCCAGATCGC-CATTGAGAACATCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTAC 272994 Query 59865 GTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTT 59924 || || | ||||||| | || ||||| |||||||||||| |||||| || Sbjct 272993 ATCCGCGACGGCGCGGAGAAGGACCGGCTCTTCCGCGCCATAGAGACGGTCCCCGCCGTG 272934 Query 59925 AAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAAC 59982 | || || || ||| |||||| ||||| ||| | | |||| || || | | Sbjct 272933 CGCCGCAAGGCCGAGTGGACCATGCGCTGGATCGAGGGCGGCGAGCGC--TTCGCCGAGC 272876 Query 59983 GTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTT 60042 |||| | || || || ||||| || || || |||||||| ||||||||||| || || | Sbjct 272875 GTCTTGTCGCGTTCGCCTGCGTCGAGGGCATTTTCTTCTCGGGCTCGTTCTGCGCCATCT 272816 Query 60043 TCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCC 60102 |||||||||| || || || |||||||||||||| | |||||||||||||| || |||| Sbjct 272815 TCTGGCTCAAGAAACGCGGGCTCATGCCGGGCCTCACCTTCTCCAACGAGCTCATCTCCC 272756 Query 60103 GGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT-ATTGGAAAA 60160 | ||||||||||| || || || || ||| | ||||| | ||| | || Sbjct 272755 GCGACGAGGGCCTGCACTGCGACTTCGC-GTGCCTTCTCTACGACCTCCTCCGCGTCAAG 272697 Query 60161 ATG--CCCTTCCAAGGATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGA 60217 || | ||| | | | | |||| || | | | | | || | ||| |||| Sbjct 272696 CTGGACGAGTCCCGCG---TCCGCGAGATCGTCGCCGACGCCGT-CGACATCGAGCGCGA 272641 Query 60218 GTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGACGCA 60277 |||| || || |||||||| ||| |||| | || ||| ||| | |||| || Sbjct 272640 GTTCGTCTGCGACGCGCTTCCCTGCGCACTCGTCGGCATGAACGGCGTGCTTATGAGCCA 272581 Query 60278 GTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAGGACCA-ATTT 60333 |||| | |||| ||||| |||||| || ||||| ||||| | | | | || | Sbjct 272580 GTACGTCGAGTTCGTCGCCGACCGCCTGCTAATGGC----TTTGGGGCACAAGAAGATGT 272525 Query 60334 ACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACT 60393 || ||| ||||| ||||||||||||||| |||||| || | || |||||||||| Sbjct 272524 ACAACGTCGCCAACCCGTTCGACTGGATGGAGCTCATCTCCCTGCAGGGTAAGACCAACT 272465 Query 60394 TCTTTGAGAAGCGGGTCGGGGATTA 60418 |||| |||||||| ||||| || || Sbjct 272464 TCTTCGAGAAGCGCGTCGGCGAGTA 272440 >seq93 Length=1192474 Score = 210 bits (232), Expect = 2e-49 Identities = 565/844 (67%), Gaps = 35/844 (4%) Strand=Plus/Minus Query 59595 TATAAGAAAGCGATCGGTTCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTG 59654 || ||||| ||| | | || |||||| ||| ||| ||| | |||||| ||| ||| | Sbjct 325754 TACAAGAAGGCGGTGGCGTCCTTCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCG 325695 Query 59655 AAGGATTGGGACAA---GCTCAATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCC 59711 | ||||||| ||||||| |||||||| || |||||| || || ||| Sbjct 325694 CGCCACTGGGACACCGCGCTCAATCCCGACGAGCGCCACTTCATCTCCCACGTGCTCGCC 325635 Query 59712 TTCTTCGCGGCGAGTGATGGAATTGTGATGGAAAATATAGACAT----GAACTTTTCCAA 59767 |||||||| || || || || ||| | || || | | | | | | | ||| Sbjct 325634 TTCTTCGCCGCCTCCGACGGCATAGTGCTTGAGAACCTGG-CGTCGCGGTTCATGTCC-- 325578 Query 59768 GGATGTCCAGATTGCCGAGGCCCGGTCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTA 59826 || |||||| | |||||||| || | || |||| | ||| ||| || |||| | Sbjct 325577 -GACGTCCAGGTGGCCGAGGCGCGCGCCTTTTACGGCTTCCAGATCGC-CATCGAGAACA 325520 Query 59827 TCCACTCCGAGACGTACTCGCTCATGATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGG 59886 ||||||| |||| ||||||||| || | || | | || || | ||||||| Sbjct 325519 TCCACTCGGAGATGTACTCGCTGCTGCTGGAGACCTACATCCGCGACGGCGCCGAGAAGG 325460 Query 59887 CTGGTCTGTTCCGTGCCATAGAGACGTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCA 59946 | |||||||| ||||||||||| |||||| || | || || || ||||||| Sbjct 325459 ACCGCCTGTTCCGCGCCATAGAGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCA 325400 Query 59947 TGCAGTGGAT-GAGTCCTG-GAGCATCATTTGCACAACGTCTCATAGCTTTTGCATGCGT 60004 ||| ||||| ||| | | |||| || || | || ||| | || || || ||||| Sbjct 325399 TGCGCTGGATCGAGGGCGGCGAGCGC--TTCGCCGAGCGGCTCGTCGCGTTCGCCTGCGT 325342 Query 60005 GGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || |||||||| || || || ||||| || || ||||||||||| || || ||||| Sbjct 325341 CGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGCCT 325282 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGA 60124 |||||||||||| | ||||||||||||||| || ||||| |||||||| || || || Sbjct 325281 CATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGA 325222 Query 60125 GTTTGCAGTGAC-GCTCTATTCACACCTATTGGAAAAATGCCCTTCCA--AGGATATTCA 60181 ||||| ||| | |||||| | || | || || | | | | | | Sbjct 325221 CTTTGC-GTGCCTCCTCTATGATCTTCTCCGCGTCAA--GCTCGACGAGTCGCGCGTCCG 325165 Query 60182 CAAGATTGT-TCAGTGGGCTTGTGAAGTGGAGAGCGAGTTCATCACAGAAGCGCTTCCAT 60240 | |||| || | | | | | || | ||| |||||||| || || ||||| || | Sbjct 325164 CGAGATAGTCGCCGACGCCGT-CGATATAGAGCGCGAGTTCGTCTGCGACGCGCTCCCCT 325106 Query 60241 GCAAACTCATAGGTATGGACGCTGGAGAAATGACGCAGTACATTCAGTTTGTCGCGGACC 60300 || || | || ||| ||| | |||| |||||||| |||| ||||| |||| Sbjct 325105 GCGCGCTAGTCGGCATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACC 325046 Query 60301 GC---CTCATGGCCCAGTTTGG--AGAAGGACCAATTTACGGCGTGAATAACCCTTTCGA 60355 || |||||||| | | || | ||| | || ||| ||| ||||| ||||| Sbjct 325045 GCCTGCTCATGGC---GCTGGGCCACAAGAA--GATGTACAACGTCGCCAACCCGTTCGA 324991 Query 60356 CTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAGCGGGTCGGGGA 60415 |||||||||| ||||| | | || |||||||||||||| |||||||| ||||| || Sbjct 324990 CTGGATGGAGCTTATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGA 324931 Query 60416 TTAT 60419 ||| Sbjct 324930 GTAT 324927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548443988583840