Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq93 102 9e-17 seq5 93.3 5e-14 seq88 91.5 2e-13 seq7 91.5 2e-13 seq14 89.7 6e-13 seq3 89.7 6e-13 seq56 86.0 7e-12 >seq93 Length=1192474 Score = 102 bits (112), Expect = 9e-17 Identities = 344/525 (66%), Gaps = 17/525 (3%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || || ||||| | ||| |||||||| ||||| || || ||| Sbjct 325270 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAG 325329 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 |||||||| ||||| || || || ||||| || || | ||||| | || ||| | Sbjct 325330 AAGATGCCCTCGACGCAGGCGAACGCGACGAGCCGCTCGGCGAA--GCGC-TCGCCGCCC 325386 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || || || ||||| || || || || Sbjct 325387 TCGATCCAGCGCATGGCCCACTCGGCCTTGCGGCGCACGGCGGGGACGGTCTCTATGGCG 325446 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 |||| |||| ||||||| || || || | | || | || || |||||| Sbjct 325447 CGGAACAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTAC 325506 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | |||| || | |||||||| || Sbjct 325507 ATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAAAAGGCGCGCGCCTCGGC 325565 Query 75101 AATCTGTACATCCTTTGA-AAAATTCATGTCG--ATATTCTCCATGACGATGCCGTCCGA 75157 | ||| || || || | | | | || | ||||| | || |||||||| || Sbjct 325566 CACCTGGACGTC---GGACATGAACCGCGACGCCAGGTTCTCAAGCACTATGCCGTCGGA 325622 Query 75158 GGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTT 75214 ||||||||| || || || || ||| ||||||||||| ||| | |||| | Sbjct 325623 GGCGGCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGATTGAGCGCGGT 325682 Query 75215 GTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAAT 75274 |||||| | | ||| | | | || | ||| ||| | |||||||| | | | Sbjct 325683 GTCCCAGTGGCGCGCGTCGGCGGAGAGGTCCACCTCATCGGCGGTCCAGAAGGACGCCAC 325742 Query 75275 CGCCTTTTTGTACAAAGACCACAAGTCAGGGTAATTGATTGGAAA 75319 |||||| ||||| || ||| | | ||||| ||||| || || Sbjct 325743 CGCCTTCTTGTAGAACTCCCAGATCTGGGGGTACTTGATCGGGAA 325787 >seq5 Length=5768508 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4540523 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4540582 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 4540583 TGAGCTACGAAAGCAA 4540598 >seq88 Length=1243166 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/77 (87%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 225513 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 225454 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||||||| || Sbjct 225453 TGAGCTACGAAAGCTAA 225437 >seq7 Length=5498359 Score = 91.5 bits (100), Expect = 2e-13 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4937205 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4937146 Query 79684 TGAGCTACGAAAGCA 79698 ||||||||||||||| Sbjct 4937145 TGAGCTACGAAAGCA 4937131 >seq14 Length=4685332 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2791922 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2791981 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2791982 TGAGCTACGAAAGC 2791995 >seq3 Length=6757429 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3449669 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3449728 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 3449729 TGAGCTACGAAAGC 3449742 >seq56 Length=1942739 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| || || Sbjct 1176215 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACGAAC 1176274 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1176275 TGAGCTACGAAAGC 1176288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547135381402800