Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq68 122 8e-23 seq45 100 2e-16 seq4152 93.3 4e-14 seq22 93.3 4e-14 >seq68 Length=1664768 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || ||||| || || | || Sbjct 546999 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCG 547058 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || ||||| Sbjct 547059 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGATCAG 547118 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || ||||| ||| |||| ||| | ||| || | || |||||| Sbjct 547119 CAGCGTCTCATCTTTGCTGGCAAGCAACTGGAGGACGGCCGCACCCTTGCTGACTACAAC 547178 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| || | | |||||||||| Sbjct 547179 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTGAGGCTCAGGGGTGGCAT 547228 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || || | |||||||| | || Sbjct 547683 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAAGTGGAGTCTTCG 547742 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| || ||||| || || || || Sbjct 547743 GACACCATTGATAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 547802 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | || | || || || || |||| || | ||| | | || |||||| Sbjct 547803 CAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 547862 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||||| ||||| || ||| | || ||||| | ||| | || |||||| Sbjct 547863 ATTCAGAAGGAATCTACCCTCCACTTGGTGCTTCGTCTCCGTGGTGGC 547910 >seq45 Length=2202424 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||||||| | || || ||||| ||||| | || Sbjct 1623013 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 1623072 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || || ||||| || ||||| || || || || Sbjct 1623073 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1623132 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | |||||||| || | || || | || | | ||||||||| Sbjct 1623133 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTCGCTGATTACAAC 1623192 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||| ||| | || |||| | ||| | |||||||||| Sbjct 1623193 ATACAGAAGGAGTCTACCCTCCACCTGGTGCTCCGTCTCAGGGGTGGCAT 1623242 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||| |||||| | || || || || || || || Sbjct 1623240 CATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACACTGGAGGTTGAGAGCTC 1623299 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||| | || || || || || ||||| ||||| || || || || || Sbjct 1623300 CGACACTATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCCCCGGACCA 1623359 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | || | || || || || |||| || | || | | || ||||| Sbjct 1623360 GCAGCGTCTCATCTTTGCAGGGAAGCAGCTGGAGGATGGCCGCACTCTCGCTGACTACAA 1623419 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||| |||||||| ||| | ||| | || | || | || ||||| Sbjct 1623420 CATTCAGAAGGAGTCCACCCTCCATCTTGTGCTCCGCCTCCGTGGTGG 1623467 >seq4152 Length=1438 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| |||||| | || || || || ||||| | || Sbjct 564 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACGATCACGCTGGAGGTGGAGTCCTCG 505 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || ||||| || ||||| || || || || Sbjct 504 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 445 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | |||||| || || |||| ||| | || | |||| |||||| Sbjct 444 CAGCGGCTGATCTTCGCCGGTAAGCAGCTGGAGGACGGCCGCACGCTCGCCGACTACAAC 385 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGT 27196 || || |||||||||||| | || |||| Sbjct 384 ATCCAGAAGGAGTCGACCCTGCACCTGGT 356 >seq22 Length=3457718 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || |||||||| |||||| | || || || || ||||| || Sbjct 1877428 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACGCTAGAGGTGGAGAGCTCG 1877487 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || || || ||||| ||||| || || || ||||| Sbjct 1877488 GACACCATTGATAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 1877547 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | ||||| || || | || || | ||| | | ||||||||| Sbjct 1877548 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCTTGGCAGATTACAAC 1877607 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || || | ||| | || |||| || || ||||||| Sbjct 1877608 ATCCAGAAGGAATCCACTCTTCATCTTGTCCTGCGCTTACGCGGTGGCA 1877656 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434854325646720