Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq7681 421 8e-113 seq46 253 2e-62 seq21 228 1e-54 seq2839 158 1e-33 seq10652 123 3e-23 seq9200 116 4e-21 seq10647 102 1e-16 seq255 102 1e-16 seq581 100 3e-16 >seq7681 Length=829 Score = 421 bits (466), Expect = 8e-113 Identities = 461/613 (75%), Gaps = 0/613 (0%) Strand=Plus/Plus Query 176487 TTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTA 176546 |||||| ||||||||| || || || || | || || | || |||||| | | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 176547 TCCATTCGGTCAAGGATCTTTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAA 176606 || | ||||||||| ||||||||||||||||||| | || || || ||||| ||||| Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 176607 CTTTATGTTTGTATTCCAAGCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGG 176666 ||||||| |||||||||| |||||||||||||| || ||||| ||||| || ||| | || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 176667 AGTAGCAGGTGTGTTTGGTGGATCTCTTTTCTCAGCAATGCACGGAAGTCTTGTTACTTC 176726 ||||| ||||| || || || || || ||| || ||||| || | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 176727 TTCACTTGTTAGAGAGACAACCGAAAACGAATCACAAAACTACGGTTACAAATTCGGACA 176786 | | | || || || || ||||| ||||| || | ||||||||||| || || Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 176787 AGAAGAAGAGACATACAACATTGTAGCTGCACACGGTTACTTTGGTCGTCTTATCTTCCA 176846 ||| |||||||| || |||||||| ||||| |||||||| |||||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 176847 GTATGCTTCTTTCAATAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCAGTTGT 176906 |||||| |||||| ||||| | | | ||||||||| | || || | || || || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 176907 TTGCATCTGGTTTACTGCAATGGGTGTTTGCACAATGGCATTCAACCTTAACGGTTTCAA 176966 | |||||||| ||||| | ||| || | || |||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 176967 CTTCAACCAGTCTGTCTTAGACAACTCTGGTAAAGTGATTCCTACATGGGGAGATATCCT 177026 |||||||| ||||| | || | | ||| || ||| ||| |||| |||||| | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 177027 TAACCGTGCAAACCTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACT 177086 |||||||| || |||||||||||||| |||||||| |||||||||||||||||||| || Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 177087 TGACCTTGCTGCT 177099 ||| | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq46 Length=2187656 Score = 253 bits (280), Expect = 2e-62 Identities = 348/485 (72%), Gaps = 1/485 (0%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || |||||||| | || | ||||| || ||||||||| | || | Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 || ||| |||| ||||||||||| || ||||| || | | | |||| | Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | || || |||||||| |||||||| ||| | |||| |||||| | ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | || ||| ||| || | | ||| ||| Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 1370594 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | |||||||||| || | | || || |||| ||||||||| ||||||||| Sbjct 1370593 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 1370534 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || || || || | || || | || |||||| | | || | ||||||||||| | Sbjct 1370533 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 1370474 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 ||||||||||||||| || | || || || ||||| |||||||||||| |||||||| | Sbjct 1370473 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 1370414 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 | |||||||||||| || ||||| ||||| || ||| | || ||||| ||||| |||| Sbjct 1370413 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGGT 1370354 Query 176686 GGATC 176690 | ||| Sbjct 1370353 GCATC 1370349 >seq21 Length=3603864 Score = 228 bits (252), Expect = 1e-54 Identities = 353/503 (70%), Gaps = 1/503 (0%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || |||||||| || || || Sbjct 2753493 TTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 2753552 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 || ||| || | ||||||||||| || ||||| || || | | || || Sbjct 2753553 TTTGGTTCTTTAATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCA 2753612 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || ||| || | || || |||||| | || ||||| ||| ||||| |||||| | ||| Sbjct 2753613 GCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATAC 2753672 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || | | || |||| | |||||| | | ||| | | ||| ||| Sbjct 2753673 AATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 2753732 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || ||||||||||||||| | | || |||||||||||||| |||||| || Sbjct 2753733 GGTCGTGAATGGGAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTAT 2753792 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCT 176565 || | || || | || || | || ||||| | |||| || ||||||||| | Sbjct 2753793 TCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGT 2753852 Query 176566 TTCTCTGATGGTATGCCTCTTGGCATTTCAGGTACATTCAACTTTATGTTTGTATTCCAA 176625 || ||| |||||||| || | || || || ||||| |||||||||||| |||||||||| Sbjct 2753853 TTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAG 2753912 Query 176626 GCAGAGCACAACATTCTAATGCACCCATTCCATATGCTTGGAGTAGCAGGTGTGTTTGGT 176685 ||| |||||||||| || | ||| ||||| || || | || ||||| ||||| || || Sbjct 2753913 GCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGC 2753972 Query 176686 GGATCTCTTTTCTCAGCAATGCA 176708 || || || ||| || ||||| Sbjct 2753973 GGTTC-CTATTCAGTGCTATGCA 2753994 >seq2839 Length=1749 Score = 158 bits (174), Expect = 1e-33 Identities = 208/286 (73%), Gaps = 2/286 (1%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| |||| | || || ||||| || ||| || | |||||| | | |||||| || Sbjct 345 ACCTATAACGATTCACTACCCTTATGAAAAATCAATTACATCAGAGCGTTTCCGTGGACG 404 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 ||||||| ||| ||||| || ||||| || ||||| || ||||| | ||||| || || Sbjct 405 AATACACTTTGAATTTGATAAATGTATTGCTTGTGAAGTATGTGTTCGTGTATGTCCGAT 464 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAACTTAGAA 19473 ||||||| | ||||||||| | |||| || | | || |||||| || | | Sbjct 465 AGATCTACCCCTTGTGGATTGGAGATTTGAA-AAGGATATTAAAAAGAAACAATTGCTTA 523 Query 19474 ATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATTGCCCAA 19533 ||||| || || || |||| ||||| || || |||||||| || || ||||| || | Sbjct 524 ATTATAGTATTGATTTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAATATTGTCCGA 583 Query 19534 CAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGA 19579 |||||||| |||| ||||| |||||||||||| | |||| | ||| Sbjct 584 CAAACTGTTTATCAATGACGGAAGAATATGAACTTTCTACTTATGA 629 >seq10652 Length=555 Score = 123 bits (136), Expect = 3e-23 Identities = 214/307 (70%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| ||| | || || ||||| || ||| || | |||||| | | ||| || || Sbjct 156 ACCTAAAACTATTCACTACCCTTATGAAAAATCAATCACATCAGAGCGTTTCCGGGGGCG 215 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| | ||| | || ||||| || ||||| || ||||| | |||||||| || Sbjct 216 AATCCACTTTTCATTTTAGAAATGTATTGCTTGTGAAGTATGTGTTCGCGTATGCCCGAT 275 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAA---CTTA 19470 ||||||| | ||||||||| | |||| | | ||| | |||| || |||| Sbjct 276 AGATCTACCCCTTGTGGATTGGAGATTTGAAAAGGATGTTAAA-AGGAAACAATTGCTTA 334 Query 19471 GA---AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATT 19527 |||||| || || || |||| ||||| || || |||||||| || ||||| | Sbjct 335 ATTCTAATTATAGTATGGATTTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAGTACT 394 Query 19528 GCCCAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGACAGACATC 19587 | |||| ||||||| |||| ||||| |||||||||||| | |||| | ||| | ||| Sbjct 395 GTCCAAAAAACTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCATG 454 Query 19588 AACTTAA 19594 || |||| Sbjct 455 AATTTAA 461 >seq9200 Length=658 Score = 116 bits (128), Expect = 4e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || ||||| || || || ||||| || |||||||| || || || Sbjct 446 TTTATTATCGCCTTCATCGCAGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 505 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 506 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG 565 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | || || |||||||| |||||||| ||| | ||||| |||||| | ||| Sbjct 566 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAATGGTTATAC 625 Query 176386 AATGGAGGACCATA 176399 ||||| || || || Sbjct 626 AATGGTGGTCCTTA 639 >seq10647 Length=555 Score = 102 bits (112), Expect = 1e-16 Identities = 209/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| ||| | || || ||||| || ||| || | |||||| | ||| | || Sbjct 156 ACCTAAAACTATTCACTACCCTTATGAAAAATCAATCACATCAGAGCATTTCCGGAGGCG 215 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| | ||| | || ||||| | ||||| || ||| | | |||||||| || Sbjct 216 AATCCACTTTTCATTTTAGAAATGTATTGATTGTGAAGTATGTATTCGCGTATGCCCGAT 275 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAA---CTTA 19470 ||||||| | ||||||||| | |||| | | ||| | |||| || |||| Sbjct 276 AGATCTACCCCTTGTGGATTGGAGATTTGAAAAGGATGTTAAA-AGGAAACAATTGCTTA 334 Query 19471 GA---AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATT 19527 |||||| || || || |||| ||||| || || |||||||| || ||||| | Sbjct 335 ATTCTAATTATAGTATGGATTTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAGTACT 394 Query 19528 GCCCAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGACAGACATC 19587 | |||| ||| ||| |||| ||||| |||||||||||| | |||| | ||| | ||| Sbjct 395 GTCCAAAAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCATG 454 Query 19588 AACTTAA 19594 || |||| Sbjct 455 AATTTAA 461 >seq255 Length=66075 Score = 102 bits (112), Expect = 1e-16 Identities = 209/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 19295 ACCTGTAACAGTACAGTATCCTTACGAGAAACTCATACCGTCAGAGAGATACCGTGGTCG 19354 |||| ||| | || || ||||| || ||| || | |||||| | ||| | || Sbjct 61626 ACCTAAAACTATTCACTACCCTTATGAAAAATCAATCACATCAGAGCATTTCCGGAGGCG 61685 Query 19355 TATACACTATGAGTTTGACAAGTGTATCGCCTGTGAGGTGTGTGTAAGAGTATGCCCTAT 19414 || |||| | ||| | || ||||| | ||||| || ||| | | |||||||| || Sbjct 61686 AATCCACTTTTCATTTTAGAAATGTATTGATTGTGAAGTATGTATTCGCGTATGCCCGAT 61745 Query 19415 CAATCTACCAGTGGTGGATTGG-GTGATGAACAAACAGACAAAGAAGAAAGAA---CTTA 19470 ||||||| | ||||||||| | |||| | | ||| | |||| || |||| Sbjct 61746 AGATCTACCCCTTGTGGATTGGAGATTTGAAAAGGATGTTAAA-AGGAAACAATTGCTTA 61804 Query 19471 GA---AATTATTCGATAGACTTTGGAGCATGTATTTTCTGCGGTAACTGCGTAGAGTATT 19527 |||||| || || || |||| ||||| || || |||||||| || ||||| | Sbjct 61805 ATTCTAATTATAGTATGGATTTCGGAGTTTGTATATTTTGTGGTAACTGTGTTGAGTACT 61864 Query 19528 GCCCAACAAACTGTCTATCCATGACAGAAGAATATGAATTGGCTACATTTGACAGACATC 19587 | |||| ||| ||| |||| ||||| |||||||||||| | |||| | ||| | ||| Sbjct 61865 GTCCAAAAAATTGTTTATCAATGACTGAAGAATATGAACTTTCTACTTATGATCGTCATG 61924 Query 19588 AACTTAA 19594 || |||| Sbjct 61925 AATTTAA 61931 >seq581 Length=5673 Score = 100 bits (110), Expect = 3e-16 Identities = 185/271 (68%), Gaps = 13/271 (5%) Strand=Plus/Plus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 5406 TTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 5465 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCAT-----CTCAGGAGC----AGTCGTCCCA 176316 | || ||| |||| ||||||||||| || || ||| || || | || | || Sbjct 5466 TCTGGTTCTTTACTTTATGGAAACAATATTATATTATCTCTGGTGCCATTATTCCTACCT 5525 Query 176317 AGCTCAAACGCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAA 176376 | || || |||||| | ||||| ||||| |||||||| ||| | ||||| || Sbjct 5526 ACTTCTGCGGCGATCGGATTGCACTTTTACCC----TGGGAAGCTGCATCTGTTGATGAG 5581 Query 176377 TGGCTCTACAATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCA 176436 ||| | |||||||| || || || | || |||| | |||||| | | ||| | | Sbjct 5582 TGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCT 5641 Query 176437 GCTTACATGGGACGCCAATGGGAACTTAGTT 176467 ||| ||||| || | ||||||||||||| Sbjct 5642 TGTTATATGGGTCGTGAGTGGGAACTTAGTT 5672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603405490187520