Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq37 114 1e-20 seq5 109 5e-19 seq16 102 7e-17 seq68 100 2e-16 seq8 95.1 1e-14 seq4152 93.3 4e-14 seq45 86.0 5e-12 >seq37 Length=2664577 Score = 114 bits (126), Expect = 1e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | ||| | ||||| || || ||| ||| || || || || || || Sbjct 1936723 CATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1936664 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| || || |||| || ||||| ||||| || || ||||||||||||||||| | Sbjct 1936663 GGCAAGGGTGCGCCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGG 1936604 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || |||| ||| | | | ||||| |||| Sbjct 1936603 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTATCAGAAGACT 1936545 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| ||||| | || || || || || || || ||||| ||||| Sbjct 1936544 CCACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1936493 Score = 104 bits (114), Expect = 2e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | ||| | ||||| ||| || ||| ||| || || || || || || Sbjct 1936495 CATGCCTCCCCTGAGGCGGAGCACCAGATGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1936436 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || || | || || ||||| ||||| || || ||||||||||||||||| | Sbjct 1936435 AGCAAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCGAAGATAAGACGCTGCTGGTCCGG 1936376 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || |||| ||| | | | || || |||| Sbjct 1936375 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCCGAGGACT 1936317 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 |||| || | ||||| | || || || || || || || ||||| ||||||| Sbjct 1936316 CCACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCATCT 1936263 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | ||| | ||||| || || ||| ||| || || || || || || Sbjct 1936951 CATGCCTCCCCTGAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 1936892 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| || || |||| || ||||| ||||| || || || | | ||||||||| | Sbjct 1936891 AGCAAGGGTACGCCCGTCCTCGAGCTGCTTGCCAGCGAAGATCAACCTCTGCTGGTCCGG 1936832 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 ||| | | ||| |||||| ||| || |||| | | | || || ||||| Sbjct 1936831 GGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCAATGGTGTCCGAGGACTC 1936772 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || || || || || ||||||||||| ||||| Sbjct 1936771 CACCTCCAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 1936721 >seq5 Length=5768508 Score = 109 bits (120), Expect = 5e-19 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| | | ||| | ||||| || |||||| ||| || || || || || ||||| Sbjct 1511110 CCTCCGCGGAGGCGGAGCACCAGGTGCAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 1511051 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || ||||| || || || || ||||| ||||||||||| | || Sbjct 1511050 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATAAGGCGCTGCTGGTCCGGCGGG 1510991 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | || ||| |||||| ||| || || | ||| | | | || || |||||||| Sbjct 1510990 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCAC 1510932 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTTTAC 39290 |||| |||||| | || |||||||| || || || ||||| |||||||| || Sbjct 1510931 CTCCAACGTGATGGTCTTCCCCGTCAGGGTCTTCACGAAGATCTGCATCTTGAC 1510878 >seq16 Length=4050460 Score = 102 bits (112), Expect = 7e-17 Identities = 156/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || ||||| || || || | Sbjct 2369233 GCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGCCC 2369292 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| ||||| || || || || ||||||||||| | || | || ||| || Sbjct 2369293 GTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTT 2369352 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 2369353 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 2369411 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 2369412 TGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 2369451 >seq68 Length=1664768 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || ||||| ||||| | || |||||||| Sbjct 547429 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTTCGGCCATCCTCAAGCTGC 547370 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| ||||| ||||||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 547369 TTGCCAGCAAAGATAAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTG 547310 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 || | ||| | | | || || |||||||| || | |||||| | || || || Sbjct 547309 GCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCAAGCGTGATGGTCTTGCCAGT 547251 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || || ||||| ||||| Sbjct 547250 GAGGGTCTTCACGAAGATCTGCAT 547227 >seq8 Length=5380884 Score = 95.1 bits (104), Expect = 1e-14 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || || || || || || | Sbjct 978489 GCGAAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGACC 978548 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTT 39187 || |||||||| ||||| || || || ||||||||||||| ||||||| | || ||| | Sbjct 978549 ATCCTCAAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGTGGG-ATGCCCTCCT 978607 Query 39188 TGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 ||||| ||| ||| || | ||| | | | || || |||||||| |||| ||| Sbjct 978608 TGTCCTGGATCTTCGCCTTCA-CGTTGTCAATGGTGTCCGAAGACTCCACCTCCAGGGTG 978666 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || || || || || |||||||| ||||| Sbjct 978667 ATGGTCTTGCCGGTAAGGGTCTTCACAAAGATCTGCAT 978704 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || || |||||||| || |||| |||||||| Sbjct 979414 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGTGTGCGGCCGTCCTCAAGCTGC 979473 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || |||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 979474 TTCCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 979533 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || ||||| || || | ||||| | || || || Sbjct 979534 GCCTTGA-CGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 979592 Query 39261 CAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || ||||| ||||||| Sbjct 979593 GAGGGTCTTCACGAAGATCTGCATCT 979618 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || ||| ||| || || || || || || || || || || | Sbjct 978717 GCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCC 978776 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || || ||||| ||||| ||||| || |||||||||||||| | || | || ||| || Sbjct 978777 ATCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTT 978836 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | ||| || ||||| || |||| |||| Sbjct 978837 GTCCTGGATCTT-TGCCTTCACGTTGTCAATCGTGTCAGATGACTCAACCTCCAAAGTGA 978895 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | | || || || || || || ||||| || ||||| Sbjct 978896 TGGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 978932 >seq4152 Length=1438 Score = 93.3 bits (102), Expect = 4e-14 Identities = 154/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| | ||||| || || || ||| || || || || || ||||| || || || | Sbjct 349 GCGGAGCACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCC 408 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 ||| || ||||| || || || || || || ||||||||||| | || | || ||| || Sbjct 409 GTCCTCCAGCTGCTTACCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTT 468 Query 39189 GTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| || || | ||| | | | || || |||||||| |||| ||||| Sbjct 469 GTCCTGGATCTTGGCCTTCA-CGTTGTCGATGGTGTCCGAGGACTCCACCTCCAGCGTGA 527 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || |||||||| || || || ||||| |||||||| Sbjct 528 TCGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATCTT 567 >seq45 Length=2202424 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || || || ||||| || || || |||| || ||||| Sbjct 1622759 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCCAGCTGC 1622700 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 ||||| || || || |||||||||||||| | ||| | || ||| |||||| ||| || Sbjct 1622699 TTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTG 1622640 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| ||| | | | || || || ||||| || | ||||| | || || || Sbjct 1622639 GCCTTGA-CGTTGTCGATTGTGTCAGATGATTCCACCTCAAGGGTGATGGTCTTACCGGT 1622581 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || || |||||||| ||||| Sbjct 1622580 GAGGGTCTTGACAAAGATCTGCAT 1622557 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429483899264618