Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq8 102 6e-17 seq45 86.0 4e-12 seq22 84.2 1e-11 >seq8 Length=5380884 Score = 102 bits (112), Expect = 6e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||||||||| || ||||| || || || || || | Sbjct 979388 ATGCAGATCTTCGTGAAGACCCTCACGGGAAAGACCATCACGCTTGAGGTCGAGTCATCT 979329 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | ||||| ||||| || || | || ||||| || Sbjct 979328 GACACCATCGACAATGTGAAGGC-CAAAATCCAGGACAAGGAGGGCATTCCCCCAGACCA 979270 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || || ||||| || || || || | ||||| | | ||| ||||| Sbjct 979269 GCAGCGTCTCATCTTCGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAA 979210 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 979209 CATCCAGAAGGAGTCCAC 979192 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || |||||| | || ||||| || | Sbjct 978932 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACTTTGGAGGTTGAGTCATCT 978873 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || ||| || ||||| || || | ||||| || || Sbjct 978872 GACACGATTGACAACGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCAG 978813 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || ||||| || | || || | | || |||||| Sbjct 978812 CAGCGTCTGATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGTACCCTCGCTGACTACAAC 978753 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 978752 ATCCAGAAGGAGTCCAC 978736 >seq45 Length=2202424 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || |||||||| || || || ||||| || || || || || | Sbjct 1623013 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 1623072 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || || | || || || || Sbjct 1623073 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1623132 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || || || || | ||||| | | ||||||||| Sbjct 1623133 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTCGCTGATTACAAC 1623192 Query 23791 ATACAAAAAGAGTCCAC 23807 ||||| || ||||| || Sbjct 1623193 ATACAGAAGGAGTCTAC 1623209 >seq22 Length=3457718 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || ||||||||||| ||||| | || Sbjct 1876550 ATGCAGATATTCGTCAAGACACTGACTGGCAAGACCATCACTCTCGAGGTTGAGAGCTCG 1876609 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 | ||| | || ||| |||| | || ||| || || || ||| | || || || || Sbjct 1876610 GGCACGATCGACAATGTTAAGGC-CAAGATTCAGGATAAGGAGGGTATCCCCCCGGACCA 1876668 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | || || || | |||||||| Sbjct 1876669 GCAGAGGCTCATTTTTGCTGGTAAGCAGCTAGAAGATGGCCGTACATTGGCTGATTACAA 1876728 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 1876729 CATCCAGAAGGAGTCGAC 1876746 Score = 84.2 bits (92), Expect = 1e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || || || || |||||||| || || || || | || Sbjct 1877428 ATGCAGATCTTTGTCAAGACTCTGACTGGCAAGACGATCACGCTAGAGGTGGAGAGCTCG 1877487 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | ||||| ||||| | || |||||||| Sbjct 1877488 GACACCATTGATAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGAATTCCTCCAGATCA 1877546 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || |||||||| || || || || || | || || || | |||||||| Sbjct 1877547 GCAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAGGATGGGCGTACCTTGGCAGATTACAA 1877606 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || ||||| Sbjct 1877607 CATCCAGAAGGAATCCAC 1877624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337961047667288