Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq49 102 1e-16 seq4 96.9 5e-15 >seq49 Length=2122476 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | ||||| |||| ||| || Sbjct 612190 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 612249 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || ||||||||||| ||||||||| ||| || |||||||| || || Sbjct 612250 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 612309 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| |||| || |||||||| Sbjct 612310 ACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGATT 612369 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| || || |||||||| Sbjct 612370 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 612410 >seq4 Length=6248241 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | || | ||||| | ||| |||| | ||||| |||| ||| || Sbjct 1174905 CCACCTTGATCAACGTAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 1174846 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || ||||||||||| ||||||||| ||| || |||||||| || || Sbjct 1174845 TTGGAAGTTCCATTTGTTCCCCGAATATAACTACCAGTAGCTCGAATATTGTGAACTGAA 1174786 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || | |||||| |||| || |||||||| Sbjct 1174785 ACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGATT 1174726 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| || || |||||||| Sbjct 1174725 CCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 1174685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712829366939520