Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq1065 509 2e-139 seq7681 473 1e-128 seq21 269 3e-67 seq46 233 2e-56 seq581 165 1e-35 seq9200 163 3e-35 >seq1065 Length=3091 Score = 509 bits (564), Expect = 2e-139 Identities = 725/1015 (71%), Gaps = 4/1015 (0%) Strand=Plus/Minus Query 178839 TTTGATGTACTCGATGACTGGCTTAAGC-GTGATCGGTTCGTTTTTGTTGGTTGGTCAGG 178897 |||||| | | || |||||| ||| | | || || ||||||||||| || ||||| || Sbjct 2440 TTTGATATTATGGACGACTGG-TTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGG 2382 Query 178898 TCTTCTTCTGTTCCCTACTGCTTACATGGCACTGGGCGGTTGGCTCACGGGCACAACATT 178957 || | || || ||| |||||| | || | || |||||| | || || || || || Sbjct 2381 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 2322 Query 178958 CGTCACCTCGTGGTATACTCACGGGATTGCTTCTTCGTATCTTGAGGGATGTAATTTCCT 179017 || || || |||||||| || || | ||| ||| ||| | || || || |||||| | Sbjct 2321 TGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGCAATTTCTT 2262 Query 179018 TACTGCTGCTGTATCAACTCCTGCTGACGCTCTCGGACATTCCCTACTTCTTCTATGGGG 179077 || || || || || || |||||| | | | | ||| || | | || |||||||| Sbjct 2261 AACGGCGGCGGTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGG 2202 Query 179078 TCCAGAAGCTCAGGGAGATTTCGTCCGCTGGCTCCAACTTGGGGGACTATGGCCTTTTGT 179137 |||||||| || || ||||| || ||| ||| | || || || ||| ||||||| Sbjct 2201 ACCAGAAGCACAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGT 2142 Query 179138 GGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCGCACG 179197 || ||||| || || || || || |||||||||||| | || || |||||| | || || Sbjct 2141 CGCTCTCCATGGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCG 2082 Query 179198 -TCTAGTCGGTATTCGTCCTTACAATGCAATCGCGTTTTCTGGTCCAATTGCTGTCTTTG 179256 ||| || | | | ||||| |||||||| | || ||||||||||| || || |||| Sbjct 2081 GTCTGTTCAAT-TGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTG 2023 Query 179257 TGTCTGTTTTTCTCATGTATCCTCTCGGACAGTCCTCGTGGTTCTTTGCGCCGTCGTTTG 179316 | || || || || || ||||| || || || || ||||||||||| ||| |||| Sbjct 2022 TTTCCGTATTCCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTG 1963 Query 179317 GAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAGGGCTTCCACAACTGGACGCTCA 179376 | || ||||| || || || ||| | || ||| | || || || || || |||||| | | Sbjct 1962 GCGTAGCAGCTATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGA 1903 Query 179377 ACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGCGGAGCATTGCTTTGTGCCATTC 179436 |||| || || |||||||| || || || | | |||| || |||| || || |||| Sbjct 1902 ACCCCTTTCATATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTC 1843 Query 179437 ATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAATCAAATACATTCAAGG 179496 |||| ||||| ||||| ||||| || || ||||| |||| | ||||| ||| | Sbjct 1842 ATGGGGCTACTGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAG 1783 Query 179497 CATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTGCCAACCGTTTCTGGT 179556 | || | || || |||| || || || ||||| ||||||||||| ||||| || |||| Sbjct 1782 CTTTTAACCCAACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGT 1723 Query 179557 CTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATTTCTTTATGTTGTTTG 179616 | || ||||||||| | || || |||||| |||||| |||||||||||||| | |||| Sbjct 1722 CCCAAATCTTTGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTG 1663 Query 179617 TTCCTGTCATGGGTCTTTGGACCTCTAGCATTGGTATTATTGGTCTTGCACTTAACCTTA 179676 | || |||| ||| | |||| | ||||| | |||| || || || ||||| Sbjct 1662 TACCCGTCACCGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTAC 1603 Query 179677 GAGCTTATGACTTTGTTTCACAAGAGATCAGAGCGGCAGAGGATCCTGAGTTCGAGACGT 179736 | || |||||||| ||||| || || ||| | || || || |||||||| || ||||| | Sbjct 1602 GTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTT 1543 Query 179737 TCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTTGGATGGCACCAGTCGATC 179796 |||| ||||| || ||||| || || || ||| | ||||| ||||||||| | |||| Sbjct 1542 TCTACACCAAAAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATC 1483 Query 179797 AACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 179851 | || |||||||| || |||| ||||| || || | ||| | || |||||||| Sbjct 1482 AGCCTCATGAAAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCT 1428 >seq7681 Length=829 Score = 473 bits (524), Expect = 1e-128 Identities = 478/619 (77%), Gaps = 2/619 (0%) Strand=Plus/Plus Query 177973 TGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTAT 178032 ||||| ||| ||||| || ||||| || || || || ||||||| ||| | |||| Sbjct 2 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTAC 61 Query 178033 CCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAAC 178092 ||| | |||||||| ||||||||| | |||||| | || ||| ||| || |||||| Sbjct 62 CCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAAC 121 Query 178093 TACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGC 178152 | ||| |||| ||||| ||||||||||||||||| ||||| || || |||||||| || Sbjct 122 TTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGT 181 Query 178153 GTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGGTTCTCTGGTTACTTCC 178212 || |||||||| || || ||||| || |||||||| ||||| ||||| |||| || | | Sbjct 182 GTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCT-C 240 Query 178213 TCGCTGGTTC-GTGAAACCACCGAGAACGAAAGTCAGAACTATGGTTACAAGTTCGGTCA 178271 | | | | || | |||||||| || || ||| | || | |||||||| || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 178272 AGAAGAAGAGACCTACAACATCGTTGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCA 178331 ||| |||||||| || ||||| || |||||||| ||||| || ||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 178332 ATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGT 178391 ||| || ||||||||||| ||||| | ||||||||| | || || |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 178392 CGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAA 178451 || ||||||||||||||| | ||| |||| || |||||||||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 178452 CTTCAACCAGTCCATCATGGATAGTCAGGGCAAAGTCCTGAACACCTGGGCAGACGTTCT 178511 |||||||| || | | ||||| || || || | || || ||||| || | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 178512 CAACCGTGCTGGTCTTGGTATGGAAGTCATGCACGAGCGTAATGCTCACAACTTCCCTCT 178571 |||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||| Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 178572 TGACCTCGCTGCTGCTGAA 178590 ||| | |||||| |||| Sbjct 601 AGACTTAGCTGCTCTTGAA 619 >seq21 Length=3603864 Score = 269 bits (298), Expect = 3e-67 Identities = 432/615 (70%), Gaps = 4/615 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||| | |||| ||||| ||| |||| || | | ||||| ||||| || Sbjct 2753401 TTCTGCAACTTGATAACTAGAACCAAAAAT-GTCTTTACATGCGATGGTTTGGTGTTTTG 2753459 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | |||| || || || || || |||| ||| |||| ||||| Sbjct 2753460 ATGATCCCTACCTTATTGACTGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCTCC 2753518 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || |||||| | || ||||| ||||| Sbjct 2753519 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTAATTTATGGAAACAA 2753578 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || || |||||||| || |||||| |||| || || | | || || || || | Sbjct 2753579 TATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACT 2753638 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCAACTCGTTAT 177896 || ||||| || | | | ||||| ||| | |||||||||||||||| | || || | Sbjct 2753639 TTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGT 2753698 Query 177897 CTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACTTTCTTACCG 177956 | |||||| | | ||| | | || ||||||||||| ||||||||| || | Sbjct 2753699 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATG 2753758 Query 177957 CCTAGGTATGCGTCCCTGGATCTGTGTAGCATACTCTGCTCCAGTCGCCGCAGCATCTGC 178016 | ||||||||||| ||||| ||| || || || |||| || || || || | || Sbjct 2753759 TTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTTGCAGCTGCTACAGC 2753818 Query 178017 TGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCTATGCCCCTGGGTAT 178076 | | ||| | | || ||| |||||||| ||| ||| | | |||| | | || || Sbjct 2753819 TATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAAT 2753878 Query 178077 CAGTGGCACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCC 178136 | ||| || ||||||| ||| |||| ||||| ||| ||||||||||||| | ||| || Sbjct 2753879 CTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAACATCCTTACGCATCC 2753938 Query 178137 CTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTGGTTCTCTGTTCAGTGCGATGCACGG 178196 || ||||| || || || |||||||| || || ||||| || |||||||| ||||| | Sbjct 2753939 ATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTCAGTGCTATGCATAG 2753997 Query 178197 TTCTCTGGTTACTTC 178211 ||| |||| || || Sbjct 2753998 TTCCTTGGTAACCTC 2754012 >seq46 Length=2187656 Score = 233 bits (258), Expect = 2e-56 Identities = 306/420 (73%), Gaps = 3/420 (1%) Strand=Plus/Minus Query 177753 TGGTTCCCTGATGTATGGCAACAACATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGC 177812 |||||| | | ||||| ||||| || || ||||||| || |||| ||| | || Sbjct 1370770 TGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCGGC 1370711 Query 177813 TATTGGTCTCCACTTCTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAA 177872 || || | || || || || || |||||||| || ||||| ||||| ||| | ||||| Sbjct 1370710 GATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATACAA 1370651 Query 177873 TGGTGGTCCTTTCCAACTCGTTATCTTCCACTTCCTGATCG-GTATCTATGCATACATGG 177931 ||||||||||| | || || | | || ||| | | | ||| || || || |||| Sbjct 1370650 TGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TGT-TATATGG 1370593 Query 177932 GTCGTGAGTGGGAACTTTCTTACCGCCTAGGTATGCGTCCCTGGATCTGTGTAGCATACT 177991 ||||||||||||||||| || | | || ||||||| ||| ||||| ||| ||||| | Sbjct 1370592 GTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATATT 1370533 Query 177992 CTGCTCCAGTCGCCGCAGCATCTGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTT 178051 | ||||| || || || || ||||||| ||| | |||| || |||||||||| || Sbjct 1370532 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGTT 1370473 Query 178052 TCTCTGACGCTATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGTCTTCCAAG 178111 ||||||| | |||| | | || ||| ||| || ||||||| ||| |||| ||| | | Sbjct 1370472 TCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAGG 1370413 Query 178112 CAGAGCACAACATCCTGATGCACCCCTTCCACATGTTGGGCGTCGCTGGTGTCTTTGGTG 178171 ||||||||||||||| ||||| || || |||||||| || || |||||||| ||||| Sbjct 1370412 TAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTGGTG 1370353 >seq581 Length=5673 Score = 165 bits (182), Expect = 1e-35 Identities = 255/361 (71%), Gaps = 15/361 (4%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| |||| | || ||||| || |||| ||||||||||| || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || ||||| || || |||||||| ||||||| || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 5431 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACA- 177775 ||| || || || || || || ||||| || || ||||||| | | ||||| |||| Sbjct 5432 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 5491 Query 177776 ----ACATCATTTCTGGTGCTGTTGTT----CCTTCTTCTAACGCTATTGGTCTCCACTT 177827 | || || |||||||| || || ||| ||||| || || || | ||||| Sbjct 5492 TATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTT 5551 Query 177828 CTATCCCATCTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTTTCCA 177887 || | ||||||||| || ||| | ||||||||| | |||||||| ||||||| | Sbjct 5552 TTACC----CTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGA 5607 Query 177888 ACTCGTTATCTTCCACTTCCTGATCGGTATCTATGCATACATGGGTCGTGAGTGGGAACT 177947 || || | | |||||| | | ||| | | || |||||||||||||||||||| Sbjct 5608 GCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 5667 Query 177948 T 177948 | Sbjct 5668 T 5668 >seq9200 Length=658 Score = 163 bits (180), Expect = 3e-35 Identities = 210/287 (73%), Gaps = 2/287 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| |||||| |||| |||| | |||||||| || |||| ||||| ||||| || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATCTGT-TTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| | | | || || || || || || |||| ||| |||| || || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCAGCCCC 471 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGTATGGCAACAA 177776 ||| || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 472 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 531 Query 177777 CATCATTTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATTGGTCTCCACTTCTATCCCAT 177836 || || |||||||| || ||||| ||||| || || || | || || || || || Sbjct 532 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAAT 591 Query 177837 CTGGGAAGCAGCTTCTCTCGATGAGTGGCTCTACAATGGTGGTCCTT 177883 |||||||| || ||| | ||||| ||| | |||||||||||||||| Sbjct 592 TTGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596219349041760