Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20japonica_20[genbank_20GCA_5F001602275.1_202016-03-15] 11,786 sequences; 334,384,427 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq1065 554 5e-153 seq7681 434 1e-116 seq21 246 4e-60 seq46 226 3e-54 seq9200 156 5e-33 seq581 150 2e-31 >seq1065 Length=3091 Score = 554 bits (614), Expect = 5e-153 Identities = 732/1010 (72%), Gaps = 4/1010 (0%) Strand=Plus/Minus Query 170605 TGGATGACTGGCTTAAACGTGATCGGTTTGTATTTGTGGGCTGGTCTGGACTTCTTCTTT 170664 |||| |||||| | | | || || || || ||||| || |||||||| || | || | Sbjct 2430 TGGACGACTGGTTACGAAGAGACCGTTTCGTTTTTGTAGGATGGTCTGGCCTATTGCTCT 2371 Query 170665 TTCCCACTGCTTATCTTGCAATTGGCGGCTGGCTTACGGGCACGACATTTGTTACAAGTT 170724 |||| ||||||| | || | || || ||| |||| || || || ||||| || || Sbjct 2370 TTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTT 2311 Query 170725 GGTACACCCACGGACTTGCAAGTTCGTACCTTGAAGG-TGCTAATTTCCTTACAGCGGCT 170783 |||| ||||| ||| | || ||||| || | ||||| ||| |||||| | || ||||| Sbjct 2310 GGTATACCCATGGATTGGCTAGTTCCTATTTAGAAGGCTGC-AATTTCTTAACGGCGGCG 2252 Query 170784 GTGTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCT 170843 || || || |||||| || | | | || ||| | | ||||| ||||| || || | Sbjct 2251 GTTTCCACCCCTGCTAATAGTTTAGCACACTCTTTGTTGCTACTATGGGGACCAGAAGCA 2192 Query 170844 CAGGGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCAC 170903 || |||||||| || |||| ||| | || || || |||| |||||| || ||||| Sbjct 2191 CAAGGGGATTTTACTCGTTGGTGTCAATTAGGTGGTCTGTGGACTTTTGTCGCTCTCCAT 2132 Query 170904 GGAGCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGG 170962 || || ||||| || |||||||||||| | || || |||||| | ||| ||| || Sbjct 2131 GGGGCTTTTGCACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGGTCT-GTTCA 2073 Query 170963 GATTAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTT 171022 | || || || |||||||| | ||||||||||| ||||| || ||||| ||| || Sbjct 2072 ATTGAGGCCTTATAATGCAATTTCATTCTCTGGTCCAATCGCGGTTTTTGTTTCCGTATT 2013 Query 171023 CCTCATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGC 171082 ||| || ||||| || ||||| || |||||||||| ||||| ||||| || ||||| Sbjct 2012 CCTTATTTATCCACTGGGGCAATCTGGTTGGTTCTTTGCACCGAGTTTTGGCGTAGCAGC 1953 Query 171083 AATCTTCCGCTTCCTGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCA 171142 || || || ||| | || ||| | ||||| || || || ||||| |||| || ||||| Sbjct 1952 TATATTTCGATTCATCCTTTTCTTCCAAGGATTTCATAATTGGACGTTGAACCCCTTTCA 1893 Query 171143 TATGATGGGTGTTGCAGGTATCCTCGGCGGTGCATTGCTTTCTGCAATTCATGGTGTTAC 171202 ||||||||| ||||| || | | |||| || |||| | || |||||||| | ||| Sbjct 1892 TATGATGGGAGTTGCCGGAGTATTAGGCGCGGCTCTGCTATGCGCTATTCATGGGGCTAC 1833 Query 171203 AGTAGAGAATACTTTGTATGAAGATGGTGATCAAGCAAACACCTTTAAGGCATTTGACAC 171262 ||||| || ||| | | |||||||||||| || || ||||| || ||| || | Sbjct 1832 TGTAGAAAACACTCTATTCGAAGATGGTGATGGTGCGAATACCTTCCGAGCTTTTAACCC 1773 Query 171263 GACTCAGGAGGAAGAGACATATTCTATGGTCACTGCTAATCGTTTCTGGTCGCAGATTTT 171322 ||||| | |||||| || ||||| ||||| |||||||| || || ||||| || || || Sbjct 1772 AACTCAAGCGGAAGAAACTTATTCAATGGTTACTGCTAACCGCTTTTGGTCCCAAATCTT 1713 Query 171323 TGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTCAT 171382 |||| | || || |||||| |||||||| |||||||||||||| ||||| || |||| Sbjct 1712 TGGTGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGCTATTTGTACCCGTCAC 1653 Query 171383 GGGTCTTTGGGTCAGTAGTCTGGGGATTATTGGTCTTGCTCTTAATCTTAGGGCTTATGA 171442 ||| | ||| | ||| | | || | |||| || ||||| || || | || ||||| Sbjct 1652 CGGTTTATGGATGAGTGCTATTGGCGTAGTTGGCCTGGCTCTGAACCTACGTGCCTATGA 1593 Query 171443 TTTCGTAAGTCAGGAGGTCAGAGCAGCAGAAGATCCAGAGTTCGAGACGTTCTATACCAA 171502 ||||| ||||| || | ||||| |||||||| || || ||||| ||||| ||||| Sbjct 1592 CTTCGTTTCCCAGGAAATCCGTGCAGCGGAAGATCCTGAATTTGAGACTTTCTACACCAA 1533 Query 171503 GAACATCCTATTGAATGAAGGTCTTCGTGCATGGATGGCACCAGTAGACCAACCACATGA 171562 || ||||| || || || ||| ||||||| ||||||||| | || || || ||||| Sbjct 1532 AAATATCCTTTTAAACGAGGGTATTCGTGCGTGGATGGCAGCTCAGGATCAGCCTCATGA 1473 Query 171563 AAACTTTGTGTTCCCAGAGGAAGTTCTACCTCGTGGCAATGCACTTTGAT 171612 ||| || | ||||| ||||| |||||||| ||||| || || |||| || Sbjct 1472 AAATCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAAT 1423 >seq7681 Length=829 Score = 434 bits (480), Expect = 1e-116 Identities = 464/613 (76%), Gaps = 0/613 (0%) Strand=Plus/Plus Query 169726 TTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTA 169785 |||||| |||||| || || ||||| ||||| || || | ||||||||| || | || Sbjct 1 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 60 Query 169786 CCCGTTTGGGCAAGGGTCGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAA 169845 ||| |||| ||||| |||||||| | ||||||| | || ||||| || || || || Sbjct 61 CCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAA 120 Query 169846 CTACATGCTGGTCTTCCAAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGG 169905 || ||| | || ||||| || |||||||||||||| ||||| || || |||||| | || Sbjct 121 CTTTATGATTGTATTCCAGGCAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 180 Query 169906 TGTTGCGGGAGTGTTTGGTGGGTCTCTGTTTAGCGCGATGCACGGTAGCCTCGTCACTTC 169965 ||| || || || || || || || || || || || ||||| ||| | | || || || Sbjct 181 TGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 240 Query 169966 GAGTCTTGTCCGTGAAACCACCGAGAACGAGTCCCAGAACTATGGTTACAAGTTCGGTCA 170025 ||| | || | |||||||| || || || || || | |||||||| || ||||| Sbjct 241 TAGTTTGATCAGGGAAACCACTGAAAATGAATCTGCTAATGAGGGTTACAAATTTGGTCA 300 Query 170026 AGAAGAAGAGACCTACAACATCGTTGCCGCTCACGGTTACTTCGGTCGCCTGATCTTCCA 170085 ||| |||||||| || ||||| || || ||||||||||| || ||||| | |||||||| Sbjct 301 AGAGGAAGAGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCA 360 Query 170086 ATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCATGGCCTGTTGT 170145 ||| ||| ||||||||||| ||||| | ||||||||| | || || |||||||| || Sbjct 361 ATATGCTAGTTTCAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGT 420 Query 170146 TGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGGCGTTCAACCTGAACGGTTTCAA 170205 || ||||||||||| ||| | ||| | || ||||| |||||||| || |||||||| Sbjct 421 AGGGATCTGGTTCACTGCTTTAGGTATTAGTACTATGGCATTCAACCTAAATGGTTTCAA 480 Query 170206 CTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACCTGGGCAGACGTTCT 170265 |||||||| || | | ||| | || ||||| || | || || ||||| || | | Sbjct 481 TTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCAT 540 Query 170266 CAACCGTGCTGGTCTTGGCATGGAAGTGATGCACGAGCGTAATGCTCACAACTTCCCTCT 170325 |||||||||| |||||| |||||||| |||||||| ||||||||||||||||||||||| Sbjct 541 CAACCGTGCTAATCTTGGTATGGAAGTAATGCACGAACGTAATGCTCACAACTTCCCTCT 600 Query 170326 CGACCTCGCTGCT 170338 ||| | |||||| Sbjct 601 AGACTTAGCTGCT 613 >seq21 Length=3603864 Score = 246 bits (272), Expect = 4e-60 Identities = 411/593 (69%), Gaps = 1/593 (0%) Strand=Plus/Plus Query 169397 TGGTTCGGCGTCCTGATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCC 169456 ||||| || || |||||||||| | | || | ||||| | || || |||||| Sbjct 2753445 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACTTCCGTATTTATTATCGCC 2753504 Query 169457 TTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTG 169516 ||||||| ||||| || || || || || || || || || || ||| ||||||| | Sbjct 2753505 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTA 2753564 Query 169517 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTT 169576 || ||||| ||||| || ||||||||||| || | || | ||| || ||| | | Sbjct 2753565 ATTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATTG 2753624 Query 169577 CACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCT 169636 || || || || | || ||||| ||| | | ||||||||||| ||||| ||||||||| Sbjct 2753625 CATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTCCT 2753684 Query 169637 TTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGG 169696 | | || |||| | |||||| | | || | | ||| ||||||||||| ||| Sbjct 2753685 TGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAATGG 2753744 Query 169697 GAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTT 169756 ||| | | || |||||||||| |||||||| |||||| || || |||| ||| Sbjct 2753745 GAACTTAGTTGATGTTTGGGTATGCGTCCTTGGATTGTTGTTGCCTATTCAACTCCTGTT 2753804 Query 169757 GCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGTTCTCTGACGCT 169816 || || || | ||| ||||| || ||||||| ||| ||||| || ||| | | | Sbjct 2753805 GCAGCTGCTACAGCTATTTTCTTGATCTACCCTACTGGTCAAGGAAGTTTTTCTAATGGT 2753864 Query 169817 ATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCCAAGCTGAGCACAAC 169876 ||| || | || ||||| || || || |||| ||| | || ||||| || |||||||| Sbjct 2753865 ATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGTTGTATTCCAGGCACAGCACAAC 2753924 Query 169877 ATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTGGTGGGTCTCTGTTT 169936 ||||| | ||| || || ||||| | ||||| || || || || || || || || || Sbjct 2753925 ATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTATTC 2753983 Query 169937 AGCGCGATGCACGGTAGCCTCGTCACTTCGAGTCTTGTCCGTGAAACCACCGA 169989 || || ||||| || | | || || || ||| | || | || ||||| || Sbjct 2753984 AGTGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGATCAGGGAGACCACTGA 2754036 >seq46 Length=2187656 Score = 226 bits (250), Expect = 3e-54 Identities = 344/483 (71%), Gaps = 5/483 (1%) Strand=Plus/Minus Query 169445 TTCATCATCGCCTTCATCGGTGCTCCCCCTGTGGACATCGACGGCATCCGCGAACCCGTT 169504 || || ||||||||||| | || | || | || || || || || ||| | || || Sbjct 1370832 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 1370773 Query 169505 GCTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAAC 169564 ||||||| | | ||||| ||||| || |||||||||| || | || ||| Sbjct 1370772 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 1370713 Query 169565 GCAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTAC 169624 || ||||| | || || || || || |||||||| ||| ||| ||||||||||| ||| Sbjct 1370712 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 1370653 Query 169625 AACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCG-GCATCTATGCTTACAT 169683 || |||||||||| | || |||| | || ||| | | | | | || || ||| || Sbjct 1370652 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGTGTAGCT-TG-TTATAT 1370595 Query 169684 GGGTCGTGAGTGGGAATTGTCCTATC-GTCTGGGTATGCGCCCTTGGATCTGTGTTGCTT 169742 |||||||||||||||| | | | || |||||||||||| |||||||| |||||| | Sbjct 1370594 GGGTCGTGAGTGGGAACT-TAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAT 1370536 Query 169743 ACTCTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGT 169802 | || ||||| ||||| || || | ||||||||| || | ||| | | || ||||| Sbjct 1370535 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAA 1370476 Query 169803 CGTTCTCTGACGCTATGCCTCTGGGTATCTCGGGAACCTTTAACTACATGCTGGTCTTCC 169862 |||||||| | |||| || | || ||||| || || || |||| ||| | || ||| Sbjct 1370475 GTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCG 1370416 Query 169863 AAGCTGAGCACAACATCCTCATGCACCCCTTCCACATGCTTGGTGTTGCGGGAGTGTTTG 169922 | | |||||||||||||| ||||| || || |||||| | ||||| || || || || Sbjct 1370415 AGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTG 1370356 Query 169923 GTG 169925 ||| Sbjct 1370355 GTG 1370353 >seq9200 Length=658 Score = 156 bits (172), Expect = 5e-33 Identities = 206/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||||| |||| ||| || || ||||| || |||| ||||| || || || Sbjct 353 TTCTGCAACTGGATAACTAGCACCGAAAATCGTCTTTACATCGGATGGTTTGGTGTTTTG 412 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| | || || ||||||||||||| || || Sbjct 413 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCAGCCCCT 472 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| |||||||| | | ||||| ||||| Sbjct 473 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 532 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || ||||||||||| || | || |||| || ||||| | || || || || || Sbjct 533 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCATTTTTACCCAATT 592 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTT 169637 |||||||| ||| | | ||||||||||| ||||| |||||||||| Sbjct 593 TGGGAAGCTGCATCTGTTGATGAATGGTTATACAATGGTGGTCCTT 638 >seq581 Length=5673 Score = 150 bits (166), Expect = 2e-31 Identities = 249/357 (70%), Gaps = 13/357 (4%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||||| |||| ||| || |||||||| || |||| |||||||| || || Sbjct 5313 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 5372 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| || || || ||||| ||||||| ||| || Sbjct 5373 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCT 5432 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| |||||||| | | ||||| ||||| Sbjct 5433 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 5492 Query 169532 ATCAT-----CTCTGGTGCTGTTGTGCC---CT-CTTCCAACGCAATCGGTCTTCACTTC 169582 || || ||||||||| || | || || |||| || ||||| | ||||| Sbjct 5493 ATTATATTATCTCTGGTGCCATTATTCCTACCTACTTCTGCGGCGATCGGATTGCACTTT 5552 Query 169583 TATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAA 169642 || || |||||||| ||| | | ||||| ||||| ||||| || ||||||| | Sbjct 5553 TACCC----TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGTCCTTATGAG 5608 Query 169643 CTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAA 169699 || |||| | |||||| | | || | | ||| |||||||||||||||||| Sbjct 5609 CTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAA 5665 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592111154370720