Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq3117 91.5 2e-13 seq1353 91.5 2e-13 seq1263 86.0 6e-12 >seq3117 Length=57653 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || ||||| |||||||| || || || ||||| | | ||| || |||||||| ||||| Sbjct 28985 AGGCACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTG 28926 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || |||||||| | |||||| || || ||| || || |||||||| Sbjct 28925 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAAAGATCCCGAAAA 28867 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 28866 GAAGATGCCCTCGACGCAGGCGAACGCGA 28838 >seq1353 Length=118606 Score = 91.5 bits (100), Expect = 2e-13 Identities = 111/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || |||||||||||||| || || || ||||| | | ||| || |||||||| || || Sbjct 95407 AGGCACGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTG 95348 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | |||||||| || |||||||| | |||||| || || ||| || || ||||| || Sbjct 95347 AGGCCTGGCATGAGCCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAACGAGCCCGAGAA 95289 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 95288 GAAGATGCCCTCGACGCAGGCGAACGCGA 95260 >seq1263 Length=124836 Score = 86.0 bits (94), Expect = 6e-12 Identities = 110/149 (74%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||||||| || || || ||||| | | ||| || |||||||| ||||| Sbjct 20296 AGGCAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTG 20237 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || |||||||| | |||||| || || ||| || || |||||||| Sbjct 20236 AGGCCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGC-GCAGAAAGATCCCGAAAA 20178 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGA 16346 ||| || ||||| || | || || |||| Sbjct 20177 GAAGATGCCCTCGACGCAGGCGAACGCGA 20149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511327402017880