Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq1245 86.0 9e-12 seq846 86.0 9e-12 seq1412 84.2 3e-11 >seq1245 Length=124263 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| || || | ||||| || | || || ||||| || |||||||| Sbjct 66842 GTTCCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCA 66901 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||||| | ||| || ||||| || ||||||||||||| |||||||| || || Sbjct 66902 GCTAATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGG 66961 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| || || || || || Sbjct 66962 GGAATGCCCTCCTTGTCCTG 66981 >seq846 Length=151982 Score = 86.0 bits (94), Expect = 9e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 146048 GTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCT 146107 ||||||||||| || || | ||||| || | || || ||||| || |||||||| Sbjct 29355 GTTCCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCA 29414 Query 146108 GAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGA 146167 | | ||||| | ||| || ||||| || ||||||||||||| |||||||| || || Sbjct 29415 GCTAATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGG 29474 Query 146168 GGAATTCCTTCTTTATCTTG 146187 ||||| || || || || || Sbjct 29475 GGAATGCCCTCCTTGTCCTG 29494 >seq1412 Length=113785 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146047 CGTTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATC 146106 ||| |||||||| || || | |||||| |||| ||| || || || || || || || Sbjct 74966 CGTGCCACCTCTGAGCCTGAGTACCAAGTGTAGAGTCGACTCCTTCTGAATGTTGTAGTC 75025 Query 146107 TGAAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGG 146166 | || || | | ||| || | || || |||||||| ||||| | ||||||||||| Sbjct 75026 AGCCAGCGTGCGTCCATCCTCCAGCTGCTTGCCAGCAAATATCAAACGCTGCTGATCCGG 75085 Query 146167 AGGAATTCCTTCTTTATCTTG 146187 |||||| ||||| ||||| || Sbjct 75086 AGGAATCCCTTCCTTATCCTG 75106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743399916865280