Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq1263 107 4e-18 seq3117 104 5e-17 seq4598 102 2e-16 seq8286 98.7 2e-15 seq6533 98.7 2e-15 seq1353 89.7 1e-12 >seq1263 Length=124836 Score = 107 bits (118), Expect = 4e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| |||||||| || || | ||||| Sbjct 20579 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCAT 20520 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| ||||||||| |||||||| ||| | || |||||| | ||| | Sbjct 20519 CCAGTCGAACGGGTTGGCGACGTTGTACATCTTCTTGTGGCCCAGCGCCATGAGCAGGCG 20460 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| |||||| Sbjct 20459 GTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCA 20400 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 ||| |||| || || | | ||| |||| ||| Sbjct 20399 GGGGAGCG-CGTCGCAGACGAACTCGCGCTC 20370 >seq3117 Length=57653 Score = 104 bits (114), Expect = 5e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| |||||||| || || | ||||| Sbjct 29268 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGGAGGGAGATAAGCTCCAT 29209 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| |||||||| |||||||| ||| | || |||||| | ||| | Sbjct 29208 CCAGTCGAACGGGTTGGCCACGTTGTACATCTTCTTGTGACCCAGCGCCATGAGCAGGCG 29149 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| |||||||| ||||| | || | || |||| |||||| Sbjct 29148 GTCGGCGACGAACTCGATGTACTGACTCATGAGCACGCCGTTCATGCCGACTAGCGCGCA 29089 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 ||| |||| || || | | ||| |||| ||| Sbjct 29088 GGGGAGCG-CGTCGCAGACGAACTCGCGCTC 29059 >seq4598 Length=35162 Score = 102 bits (112), Expect = 2e-16 Identities = 171/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Minus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 |||| ||| |||| |||| | || || || || || | ||||| ||||| || | Sbjct 34870 TGGATAGCGAGATTATTTACGATAGGGACTTCGATTATGACTACTTTGGGTTCAAGACTC 34811 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 |||||| || || ||| | || ||| ||| ||| | || ||| || || ||||||| Sbjct 34810 TGGAGAGGTCTTACCTCTTGAAGCTTGGTGGGAAGGTTGTCGAAAGACCACAACACATGT 34751 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTA 248960 | ||| |||| | || ||||| |||||||||||||| || | | ||| || | || || Sbjct 34750 TAATGAGAGTTTCAGTGGGGATACACAAGGATGACATTGA-ATC-TGCCATCAAAACATA 34693 Query 248961 -CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 || | | ||| | | |||||| | |||||||| |||| ||||| ||||| || |||| Sbjct 34692 CCATCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACGCTTTTCAATGCTGGTA 34634 Query 249020 C 249020 | Sbjct 34633 C 34633 >seq8286 Length=8159 Score = 98.7 bits (108), Expect = 2e-15 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 |||| ||| |||| |||| | || || || || || | ||||| |||||||| | Sbjct 411 TGGATAGCGAGATTATTTACGATAGGGACTTTGACTATGACTACTTTGGGTTCAAAACTC 470 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| || || ||| | || ||| ||| ||| | || ||| || |||||||||| Sbjct 471 TCGAGAGGTCTTACCTCTTAAAGCTTGGTGGTAAGGTTGTTGAAAGACCACAGCACATGT 530 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTA 248960 | ||| |||| | || ||||| || | ||||||||| || | | ||| || | || || Sbjct 531 TAATGAGAGTTTCAGTGGGGATACATATGGATGACATTGA-ATC-TGCCATCCAAACATA 588 Query 248961 -CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 || | | ||| | | |||||| | |||||||| |||| ||||| ||||| ||||| | Sbjct 589 CCATCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACGCTTTTCAATGCCGGCA 647 Query 249020 C 249020 | Sbjct 648 C 648 >seq6533 Length=17200 Score = 98.7 bits (108), Expect = 2e-15 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 248783 TGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGC 248842 |||| ||| |||| |||| | || || || || || | ||||| |||||||| | Sbjct 412 TGGATAGCGAGATTATTTACGATAGGGACTTTGACTATGACTACTTTGGGTTCAAAACTC 471 Query 248843 TGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGT 248902 | |||| || || ||| | || ||| ||| ||| | || ||| || |||||||||| Sbjct 472 TCGAGAGGTCTTACCTCTTAAAGCTTGGTGGTAAGGTTGTTGAAAGACCACAGCACATGT 531 Query 248903 TGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGC--TCGAGACGTA 248960 | ||| |||| | || ||||| || | ||||||||| || | | ||| || | || || Sbjct 532 TAATGAGAGTTTCAGTGGGGATACATATGGATGACATTGA-ATC-TGCCATCCAAACATA 589 Query 248961 -CACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTA 249019 || | | ||| | | |||||| | |||||||| |||| ||||| ||||| ||||| | Sbjct 590 CCATCTG-ATGTCTCAGCGCTGGTTTACACATGCTTCACCAACGCTTTTCAATGCCGGCA 648 Query 249020 C 249020 | Sbjct 649 C 649 >seq1353 Length=118606 Score = 89.7 bits (98), Expect = 1e-12 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 157258 GTACTCGGCCACTCTATTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCAT 157317 ||||||| | || | ||||| || ||||||||||| ||||| || || || | ||||| Sbjct 95690 GTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTACCCTGCAGGGAGATGAGCTCCAT 95631 Query 157318 CCACTCGAATGGGTTGGCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTA 157377 ||| ||||| || |||||| |||||||| ||| | || ||||| | ||| | Sbjct 95630 CCAGTCGAACGGATTGGCGACGTTGTACATCTTCTTGTGCCCCAAAGCCATTAGCAGGCG 95571 Query 157378 GTCCGCCACAAACTTGATGTACTCTGTCATGCTCTTCTCGCTGATACCGATGAGCGCGAC 157437 ||| || || |||| || ||||| |||| | || | || |||| ||| ||| Sbjct 95570 GTCGGCGACGAACTCGACGTACTGGCTCATAAGCACGCCGTTCATGCCGACGAGTGCGCA 95511 Query 157438 GGGAAGCGCCGACG-AAATGAATTCGCACTC 157467 |||||||| || || | | ||| |||| ||| Sbjct 95510 GGGAAGCG-CGTCGCAGACGAACTCGCGCTC 95481 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073579172386112