Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq5666 91.5 1e-13 seq2169 91.5 1e-13 seq1245 91.5 1e-13 seq846 91.5 1e-13 >seq5666 Length=23988 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || || |||| |||||| || || ||||| ||||||||||| || || Sbjct 18559 TCCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 18618 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| |||| || ||||| || || ||| Sbjct 18619 TAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 18678 Query 18218 CACGCCTTCCTTATC 18232 | ||| ||||| || Sbjct 18679 AATGCCCTCCTTGTC 18693 >seq2169 Length=81208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 18098 TCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGC 18157 ||| |||| || || || |||| |||||| || || ||||| ||||||||||| || || Sbjct 76080 TCCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAGC 76139 Query 18158 CATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGG 18217 | ||| | | |||||||||||| || || ||| |||| || ||||| || || ||| Sbjct 76140 TAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGGG 76199 Query 18218 CACGCCTTCCTTATC 18232 | ||| ||||| || Sbjct 76200 AATGCCCTCCTTGTC 76214 >seq1245 Length=124263 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 || || || |||| ||||||||| || |||||||||||||| || || || | |||| | Sbjct 66854 AGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTT 66913 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| || || ||| | || || ||||| || || ||| | ||| ||| Sbjct 66914 CCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCC 66973 Query 18228 TTATC 18232 || || Sbjct 66974 TTGTC 66978 >seq846 Length=151982 Score = 91.5 bits (100), Expect = 1e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 18108 AGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTA 18167 || || || |||| ||||||||| || |||||||||||||| || || || | |||| | Sbjct 29367 AGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAGCTAATGTTCTT 29426 Query 18168 CAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCC 18227 | |||||||||||| || || ||| | || || ||||| || || ||| | ||| ||| Sbjct 29427 CCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCC 29486 Query 18228 TTATC 18232 || || Sbjct 29487 TTGTC 29491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379281082122705