Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq8286 89.7 6e-13 seq6533 89.7 6e-13 seq3117 89.7 6e-13 seq1263 89.7 6e-13 >seq8286 Length=8159 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || | || || ||||| || |||||||| | ||| | |||| Sbjct 649 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 590 Query 63722 GTACGTCTCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATT 63779 ||| || | || || || || || || |||| ||| || || |||| || | |||| Sbjct 589 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 532 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 ||||||||||| ||||||||||||| || | || || | ||| || | || Sbjct 531 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 472 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 471 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 422 >seq6533 Length=17200 Score = 89.7 bits (98), Expect = 6e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 63662 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATT 63721 ||| || ||||| || | || || ||||| || |||||||| | ||| | |||| Sbjct 650 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 591 Query 63722 GTACGTCTCAATAGCTGAGTCTATATC--CCATTGATGAATTCCTACTGCGACACGCATT 63779 ||| || | || || || || || || |||| ||| || || |||| || | |||| Sbjct 590 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 533 Query 63780 AACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCC 63839 ||||||||||| ||||||||||||| || | || || | ||| || | || Sbjct 532 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 473 Query 63840 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63889 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 472 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 423 >seq3117 Length=57653 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || |||||||||||||||||||| | || | ||||| || || ||||| Sbjct 28982 CACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 28923 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||| || || || ||||| || |||| ||| ||||| ||||||||| Sbjct 28922 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAG 28863 Query 33702 ATTCCTTCTACTGCAG 33717 || || || || |||| Sbjct 28862 ATGCCCTCGAC-GCAG 28848 >seq1263 Length=124836 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || |||||||||||||||||||| | || | ||||| || || ||||| Sbjct 20293 CAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 20234 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| ||||| || || || ||||| || |||| ||| ||||| ||||||||| Sbjct 20233 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGGCGCAGAAAGATCCCGAAAAGAAG 20174 Query 33702 ATTCCTTCTACTGCAG 33717 || || || || |||| Sbjct 20173 ATGCCCTCGAC-GCAG 20159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629710460153520