Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq8286 100 4e-16 seq6533 98.7 1e-15 seq4598 96.9 5e-15 seq446 91.5 2e-13 seq3117 87.8 2e-12 seq1263 87.8 2e-12 >seq8286 Length=8159 Score = 100 bits (110), Expect = 4e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 971 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 912 Query 72238 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| | ||||| || ||| || ||||| || ||| |||| ||||||||| || ||| Sbjct 911 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTGGCTCGAATATTGTGAACTGA 853 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 852 AACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGAT 793 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| || || |||||||| Sbjct 792 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 751 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 649 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 590 Query 72477 GTACGTCTCAATAGCTGATTCTATATC--CCATTGATGTATTCCTACCGCGACACGCATT 72534 ||| || | || || ||||| || || |||| |||||| || || | || | |||| Sbjct 589 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 532 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 ||||| ||||| ||||||||||| | ||| | | || || | ||| || | || Sbjct 531 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 472 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 471 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 422 >seq6533 Length=17200 Score = 98.7 bits (108), Expect = 1e-15 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 650 AGTGCCGGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 591 Query 72477 GTACGTCTCAATAGCTGATTCTATATC--CCATTGATGTATTCCTACCGCGACACGCATT 72534 ||| || | || || ||||| || || |||| |||||| || || | || | |||| Sbjct 590 GTATGTTTGGATGGCAGATTCAATGTCATCCAT--ATGTATCCCCACTGAAACTCTCATT 533 Query 72535 AACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCC 72594 ||||| ||||| ||||||||||| | ||| | | || || | ||| || | || Sbjct 532 AACATGTGCTGTGGTCTTTCAACAACCTTACCACCAAGCTTTAAGAGGTAAGACCTCTCG 473 Query 72595 AAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 | |||||| || ||||| |||| || |||||| | ||||||||||| Sbjct 472 AGAGTTTTGAACCCAAAGTAGTCATAGTCAAAGTCCCTATCGTAAATAAT 423 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 972 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 913 Query 72238 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| | ||||| || ||| || ||||| || ||| | || ||||||||| || ||| Sbjct 912 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 854 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 853 AACACCAATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGAGTATCATAGAT 794 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| || || |||||||| Sbjct 793 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 752 >seq4598 Length=35162 Score = 96.9 bits (106), Expect = 5e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 34310 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 34369 Query 72238 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| | ||||| || ||| || ||||| || ||| | || ||||||||| || ||| Sbjct 34370 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAACTGA 34428 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 34429 AACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGAT 34488 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| || || |||||||| Sbjct 34489 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 34530 Score = 86.0 bits (94), Expect = 8e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | || || ||||| || |||||||| | ||||| |||| Sbjct 34632 AGTACCAGCATTGAAAAGCGTTGGTGAAGCATGTGTAAACCAGCGCTGAGACATCAGATG 34691 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | || || ||||| || || | ||| ||||| || || | || | ||||| Sbjct 34692 GTATGTTTTGATGGCAGATTCAATGTCATCCTTG-TGTATCCCCACTGAAACTCTCATTA 34750 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||| || || |||||||| || | ||| | | ||||| | ||| || | |||| Sbjct 34751 ACATGTGTTGTGGTCTTTCGACAACCTTCCCACCAAGCTTCAAGAGGTAAGACCTCTCCA 34810 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||| || || ||||| |||| || ||||| | ||||||||||| Sbjct 34811 GAGTCTTGAACCCAAAGTAGTCATAATCGAAGTCCCTATCGTAAATAAT 34859 >seq446 Length=200473 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || || ||||| | || | ||| || | ||| |||| | ||||| |||| ||| ||| Sbjct 90947 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAACATAGGAACAATCCCA 90888 Query 72238 TTGGATGCACCATTGGT-CCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||||| | ||||| || ||| || ||||| || ||| | || ||||||||| | ||| Sbjct 90887 TTGGAAGTTCCATTTGTTCCCCGA-ATATAACTACCAGTAGCTCGAATATTGTGAGCTGA 90829 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | || ||| || | ||||||||||| Sbjct 90828 AACACCGATTCCTCCAGCAGATTTGCTTATGACAGCACATTCCTTCAGGGTATCATAGAT 90769 Query 72357 GCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| || || ||||| ||||| || || |||||||| Sbjct 90768 TCCCTCAATGCTGTCATCTTTCATGCAAATGAGGAAACAGCT 90727 >seq3117 Length=57653 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||||||||||||||| || | || | |||||||| || ||||| Sbjct 28982 CACGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 28923 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| || || || ||||| || || | |||| || ||||| |||||||| Sbjct 28922 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAA 28864 Query 42184 GATTCCTTCTAC 42195 ||| || || || Sbjct 28863 GATGCCCTCGAC 28852 >seq1263 Length=124836 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||||||||||||||| || | || | |||||||| || ||||| Sbjct 20293 CAGGCAAAGTCGCAGTGCAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAAGTGAGG 20234 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 || ||||| ||||| || || || ||||| || || | |||| || ||||| |||||||| Sbjct 20233 CCCGGCATGAGGCCGCGTTTCTTGAGCCAGAAGATGG-CGCAGAAAGATCCCGAAAAGAA 20175 Query 42184 GATTCCTTCTAC 42195 ||| || || || Sbjct 20174 GATGCCCTCGAC 20163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671025030832840