Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq1353 179 5e-40 seq1263 172 8e-38 seq3117 167 3e-36 >seq1353 Length=118606 Score = 179 bits (198), Expect = 5e-40 Identities = 591/892 (66%), Gaps = 40/892 (4%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| ||| || | Sbjct 94825 CCATGTTCCCGATCAAGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCCGTGGCTTCGT 94884 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| || | ||||| | | || | Sbjct 94885 TCTGGACCGCCGAGGAGGTGGACCTCTCCGCCGACGTGCGGCACTGGGACGCCGCGCTCA 94944 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || ||||| | || || || ||| || | |||||||| |||| ||||| || Sbjct 94945 ACGCGGAC-GAGCGCCACTTCATCTCCCACGTTCTCGCCTTCTTCGCCGCGTCCGACGGC 95003 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCAT-TC-CAGAGGTG 125228 ||||| ||| || ||| | | || ||| | || || ||| || | |||| | Sbjct 95004 ATCGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGT---CCAGGTCGCCGAGGCG 95060 Query 125229 TCGTGCTTT-TACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || || ||||| ||||| ||| ||||||||| | |||||||| |||||||| Sbjct 95061 -CGCGCGTTCTACGGCTTCCAGATCGCCATTGAGAACATCCACTCGGAGATGTACTCGCT 95119 Query 125288 ACTGATTGACATGTACATTCGCGATC-CGCAACGTAAACACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| ||| | || || |||||| || || | Sbjct 95120 GCTGCTGGAGACCTACATCCGCGACGGCGCGGAG-AAGGACCGGCTCTTCCGAGCCATAG 95178 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | ||||| || | | || ||||| | ||| || || |||||||| | || | Sbjct 95179 AGACGGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGACCATGCGCTGGATCGAGGGCGGCG 95238 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| |||||||||||||| ||| Sbjct 95239 AGCGCTTCG----CCGAGCGTCTTGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTCTCG 95294 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | ||| ||| |||||||| ||||||||||| ||||| |||||||| || || || Sbjct 95295 GGCTCGTTCTGC-GCCATCTTCTGGCTCAAGAAACGCGGGCTCATGCCAGGCCTCACCTT 95353 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 | |||||| | || || || ||||||||||| ||||| ||||| || || || | Sbjct 95354 CTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGCGTGCCTTCT-CT 95412 Query 125585 TCGCAACT-ATCTGCGTCCCGAGTGCAGA-TCCAGCGATGAAAAGGTCATCAACATTGTA 125642 || | || || ||||| | | || ||| || ||| | | || || Sbjct 95413 ACG-ACCTCCTCCGCGTCAAGCTGGACGAGTCCCGC---------GTCCGCGAGATCGTC 95462 Query 125643 ACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCA-TGAT 125701 |||| ||||| || || | ||||| | ||| | || || | ||| | | Sbjct 95463 GCCGACGCCGTCGACATCGAGCGCGAGTTCGTCTGCGACGCGCTTCC-CTGCGCACTCGT 95521 Query 125702 TGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTA 125761 ||||||||| || ||| ||| || ||||| | ||||| || || || || || || | Sbjct 95522 CGGCATGAACGGCGTGCTTATGAGCCAGTACGTCGAGTTCGTCGCCGACCGCCTGCT-AA 95580 Query 125762 CGAGTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAG 125818 | || | || | | ||||| ||||||| | ||||| || || | ||| Sbjct 95581 TGGCTT--TGGGGCACAAGAAGATGTACAACGTCGCCAATCCGTTCGACTGGATGGAGCT 95638 Query 125819 CATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 ||| || || |||||||||||||||| ||||||||| ||| |||||||| Sbjct 95639 CATCTCCCTGCAGGGTAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 95690 >seq1263 Length=124836 Score = 172 bits (190), Expect = 8e-38 Identities = 585/891 (66%), Gaps = 38/891 (4%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| ||| || | Sbjct 19714 CCATGTTCCCGATCAAGTACCCCCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGT 19773 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | | ||||| | | || | Sbjct 19774 TCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTCA 19833 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || ||||| | || || || ||| | | || ||||| |||| |||||| || Sbjct 19834 ACCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTAGCTTTCTTCGCCGCCTCCGACGGC 19892 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCA--TTCCAGAGGTG 125228 || || ||| || ||| | | || ||| | || || ||| | | |||| | Sbjct 19893 ATAGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGT---CCAGGTGGCCGAGGCG 19949 Query 125229 TCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || |||||||| ||||| ||| || |||||| | |||||||| |||||||| Sbjct 19950 -CGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCT 20008 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| | || || || || || || ||| || | Sbjct 20009 GCTGCTGGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTGTTCCGCGCCATAG 20067 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || || || | | || ||||| | |||| || || |||||||| | || | Sbjct 20068 AGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGCG 20127 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| |||||||||||||||||| Sbjct 20128 AGCGCTTCG----CCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCG 20183 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | || ||| |||||||| ||||||||||| ||||| |||||||| || || || Sbjct 20184 GGATCTTTCTGC-GCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTT 20242 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT 125584 | |||||| | || || || |||||||| || ||||| ||||||||| || || Sbjct 20243 CTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGCCTGCCTCCT--- 20299 Query 125585 TCGCAACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 | || | || | ||| || || || | ||| ||| | | || || | Sbjct 20300 ---CTACGACCTTC--TCCGCGTCAAGCTCGA-CGAGTCGCGCGTCCGCGAGATAGTCGC 20353 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGG 125704 ||| ||||| ||||| | ||||| | ||| | || || | | | || Sbjct 20354 CGACGCCGTCGATATAGAGCGCGAGTTCGTCTGCGACGCGCTCCCCTGCGCGCTAGTCGG 20413 Query 125705 CATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGA 125764 ||||||| || ||| ||| | ||||||| ||||| || || || || || || | Sbjct 20414 CATGAACGGCGTGCTCATGAGTCAGTACATCGAGTTCGTCGCCGACCGCCTGCT---CAT 20470 Query 125765 GTTGATTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGC-- 125819 | | | |||| | ||||| ||||||| | || || || || | ||| ||| Sbjct 20471 GGCGCTGGGCCACAAGAAGATGTACAACGTCGCCAACCCGTTCGACTGGATG--GAGCTT 20528 Query 125820 ATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || || || |||| ||||||||||| ||||||||| ||| |||||||| Sbjct 20529 ATCTCCCTCCAGGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 20579 >seq3117 Length=57653 Score = 167 bits (184), Expect = 3e-36 Identities = 399/588 (68%), Gaps = 19/588 (3%) Strand=Plus/Plus Query 124993 CCCTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCT 125052 || |||| || |||| ||| | | || ||||| | ||||| ||||| ||| || | Sbjct 28403 CCATGTTCCCGATCAAGTACCCCCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCGT 28462 Query 125053 TTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGA-GACTCGTTTG 125111 | ||||| | ||| ||||| || || ||| ||| | | | ||||| | | || | Sbjct 28463 TCTGGACCGCCGATGAGGTGGACCTCTCCGCCGACGCGCGCCACTGGGACGCCGCGCTCA 28522 Query 125112 ACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGA 125171 || || ||||| | || || || ||| | | || ||||| |||| |||||| || Sbjct 28523 ACCCCGAC-GAGCGCCACTTCATCTCCCACGTGCTCGCTTTCTTCGCCGCCTCCGACGGC 28581 Query 125172 ATCGTCAACGACAATCTGTTGACACGATTC-TCTCAAGAGTTGACCA--TTCCAGAGGTG 125228 || || ||| || ||| | | || ||| | || || ||| | | |||| | Sbjct 28582 ATAGTGCTCGAGAACCTGGCGTCGCGGTTCATGTCCGACGT---CCAGGTGGCCGAGGCG 28638 Query 125229 TCGTGC-TTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTAC 125287 || || |||||||| ||||| ||| || |||||| | |||||||| |||||||| Sbjct 28639 -CGCGCCTTTTACGGCTTCCAGATCGCCATCGAGAACATCCACTCGGAGATGTACTCGCT 28697 Query 125288 ACTGATTGACATGTACATTCGCGATCCGCAACGTAAAC-ACATGCTCTTTAACGCAATCG 125346 ||| | || | ||||| ||||| | || || || || || || ||| || | Sbjct 28698 GCTGCTGGAGACCTACATCCGCGA-CGGCGCCGAGAAGGACCGCCTGTTCCGCGCCATAG 28756 Query 125347 ACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACA 125406 | || || || | | || ||||| | |||| || || |||||||| | || | Sbjct 28757 AGACCGTCCCCGCCGTGCGCCGCAAGGCCGAGTGGGCCATGCGCTGGATCGAGGGCGGCG 28816 Query 125407 AGT-CTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCG 125465 || ||||| |||| | || || || |||||| ||| |||||||||||||||||| Sbjct 28817 AGCGCTTCG----CCGAGCGGCTCGTCGCGTTCGCCTGCGTCGAGGGCATCTTCTTTTCG 28872 Query 125466 GG-TAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCA 125524 || | || ||| |||||||| ||||||||||| ||||| |||||||| || || || Sbjct 28873 GGATCTTTCTGC-GCCATCTTCTGGCTCAAGAAACGCGGCCTCATGCCGGGCCTCACTTT 28931 Query 125525 CAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGC 125572 | |||||| | || || || |||||||| || ||||| |||||||| Sbjct 28932 CTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGCGACTTTGC 28979 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740933136566840