Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq990 91.5 1e-13 seq8345 82.4 6e-11 seq212 82.4 6e-11 >seq990 Length=138715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||| ||||| ||||| ||||| ||||||| || | | ||||| Sbjct 23105 CACCAAGTGGAGGGTAGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 23164 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| |||| || | |||||| ||| || | |||||| ||||| Sbjct 23165 CAGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 23224 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | || || || |||| ||| | ||| ||||| || Sbjct 23225 GATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTT 23284 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| || ||||| Sbjct 23285 GCCAGTAAGCGTCTTCACAAAGATCTGCAT 23314 >seq8345 Length=7904 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | ||||||||||| || || |||||||| || | ||| | ||||| Sbjct 7506 CACCAGGTGGAGGGTAGACTCCTTCTGTATGTTGTAATCAGCAAGTGTGCGCCCATCCTC 7565 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||| || || ||| | ||||| |||||||| ||| || | |||||| ||||| Sbjct 7566 AAGCTGCTTGCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 7625 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || || || || | | | | || || || |||| || | ||| ||||| || Sbjct 7626 GATCTTAGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTT 7685 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || |||||||| || ||||| Sbjct 7686 GCCGGTGAGGGTCTTGACAAAGATCTGCAT 7715 >seq212 Length=258318 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| ||| | || || ||||| ||||| ||||| ||||||| || | | ||||| Sbjct 16693 CACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 16752 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 |||||| ||||| ||| |||| || | |||||| ||| || | |||||| ||||| Sbjct 16753 CAGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTG 16812 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 || ||| || || | | | || || || |||| || | ||| ||||| || Sbjct 16813 GATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTGATGGTCTT 16872 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| || ||||| Sbjct 16873 GCCAGTAAGCGTCTTCACAAAGATCTGCAT 16902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414504039084946