Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq1245 84.2 2e-11 seq846 84.2 2e-11 >seq1245 Length=124263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| |||| |||| | ||||| ||||| || ||||| || |||||||| ||| Sbjct 66833 TTGATCATAGTTCCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATG 66892 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || ||||| | | ||| | |||||||||||| || || ||| |||| ||||| || Sbjct 66893 TTATAATCAGCTAATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGC 66952 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | ||| || ||||| Sbjct 66953 TGGTCTGGGGGAATGCCCTCCTTGTC 66978 >seq846 Length=151982 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/146 (73%), Gaps = 1/146 (1%) Strand=Plus/Plus Query 19971 TTTATCATT-TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATG 20029 || ||||| |||| |||| | ||||| ||||| || ||||| || |||||||| ||| Sbjct 29346 TTGATCATAGTTCCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATG 29405 Query 20030 TTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGT 20089 || ||||| | | ||| | |||||||||||| || || ||| |||| ||||| || Sbjct 29406 TTATAATCAGCTAATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGC 29465 Query 20090 TGATCGACGGGCACGCCTTCTTTGTC 20115 || || ||| | ||| || ||||| Sbjct 29466 TGGTCTGGGGGAATGCCCTCCTTGTC 29491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419517607398129