Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq463 140 7e-28 seq8279 134 3e-26 seq990 122 2e-22 seq212 116 9e-21 seq1245 102 2e-16 seq846 102 2e-16 seq5666 87.8 4e-12 seq4834 87.8 4e-12 seq3117 87.8 4e-12 seq2169 87.8 4e-12 seq1263 87.8 4e-12 seq890 87.8 4e-12 >seq463 Length=196461 Score = 140 bits (154), Expect = 7e-28 Identities = 171/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | ||| || || || | ||||| || ||||| || || ||||| Sbjct 42999 ATGCCACCCCTAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCT 42940 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || | |||||||| || || |||||||| || || |||||||| || || || Sbjct 42939 GCCAGTGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGG 42880 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || ||||| |||||||||||||| || ||||| || | || || || | || Sbjct 42879 GGGATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATAGTGTC-AGAGCTCTC 42821 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| | ||| || ||||| || ||||| || || |||||||||||||| Sbjct 42820 AACCTCCAATGTTATTGTCTTGCCTGTAAGGGTCTTCACAAATATCTGCAT 42770 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | ||| || || || | || || || ||||| || || || ||| Sbjct 42543 ATTCCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCA 42484 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || |||||||| || || ||||||||||| |||||||| || || || Sbjct 42483 GCCAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGG 42424 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || |||||||||||||| || || ||||| | | || || | || | || Sbjct 42423 GGGATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTTGATCGTGTC-CGAGCTCTC 42365 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| ||||| || || ||||||||||| Sbjct 42364 AACCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 42314 Score = 125 bits (138), Expect = 2e-23 Identities = 168/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | ||||| || ||||| ||||| || ||| Sbjct 43227 ATCCCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCA 43168 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || || || ||||| || |||||||| || || | ||| || || || Sbjct 43167 GCCAATGTGCGCCCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGT 43108 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || ||||| || ||||| |||||||| || ||||| || | || || || | || Sbjct 43107 GGGATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTG-AGCTCTC 43049 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| || || || ||||| |||||||| Sbjct 43048 AACCTCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 42998 >seq8279 Length=8219 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || || || | ||| || || || | || || || ||||| || || || ||| Sbjct 6312 ATTCCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAATCA 6253 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | | || | || |||||||| || || ||||||||||| |||||||| || || || Sbjct 6252 GCCAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCGGG 6193 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || |||||||||||||| || || ||||| || | || | | || | || Sbjct 6192 GGGATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCGATCGT-GCCCGAGCTCTC 6134 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| ||||| || || ||||||||||| Sbjct 6133 AACCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCAT 6083 Score = 104 bits (114), Expect = 5e-17 Identities = 162/231 (70%), Gaps = 13/231 (6%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | ||||| || ||||| ||||| || ||| Sbjct 6962 ATCCCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCA 6903 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || || || ||||| || |||||||| || || | ||| || || | Sbjct 6902 G-----------CCATCCTCAAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTAGT 6854 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGT-TC 104508 || || || || || ||||| |||||||| || ||||| || | || || || | || Sbjct 6853 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTG-AGCTCTC 6795 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||||||||| ||||| || || || ||||| |||||||| Sbjct 6794 AACCTCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCAT 6744 >seq990 Length=138715 Score = 122 bits (134), Expect = 2e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| |||||||| || ||||| | || || | || || || || || || ||| Sbjct 23118 GTAGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCA 23177 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || ||||| || || || || ||||| ||||| || || Sbjct 23178 GCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTC 23237 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || |||| || || ||||| |||||||| || Sbjct 23238 ACGTTATCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTGCCAGTAAGCGTC 23297 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 23298 TTCACAAAGATCTGCAT 23314 >seq212 Length=258318 Score = 116 bits (128), Expect = 9e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || ||||| | || || | || || || || || || ||| Sbjct 16706 GTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCA 16765 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || ||||| || || || || || || ||||| || || Sbjct 16766 GCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTTCGCCTTC 16825 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||||| || || ||||| |||||||| || Sbjct 16826 ACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTGATGGTCTTGCCAGTAAGCGTC 16885 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| |||||||| Sbjct 16886 TTCACAAAGATCTGCAT 16902 >seq1245 Length=124263 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| || || | || | ||| || ||||| ||||| ||||| |||| Sbjct 66843 TTCCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAG 66902 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || ||||||||||| ||||| || || || || | Sbjct 66903 CTAATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGG 66962 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 66963 GAATGCCCTCCTTGTCCTGAA 66983 >seq846 Length=151982 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| ||||| ||||| || || | || | ||| || ||||| ||||| ||||| |||| Sbjct 29356 TTCCACCTCTGAGCCTCAGGACCAAGTGAAGTGTCGACTCTTTTTGAATGTTATAATCAG 29415 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || ||||||||||| ||||| || || || || | Sbjct 29416 CTAATGTTCTTCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGG 29475 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 29476 GAATGCCCTCCTTGTCCTGAA 29496 >seq5666 Length=23988 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | || | || || ||||||||||| || || |||| Sbjct 18558 TTCCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAG 18617 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || |||||||| || ||||| || || || || | Sbjct 18618 CTAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGG 18677 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 18678 GAATGCCCTCCTTGTCCTGAA 18698 >seq4834 Length=32922 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 165090 tttATACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATA 165149 |||| || ||| | ||||| ||| ||| ||||| | ||| ||||| |||||||| | Sbjct 26445 TTTACACTGATGATGATGAGTGGTCTACCTGGAAGAGGATAGGAGATCCAGTTTTACACA 26504 Query 165150 TAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAG 165209 |||| || ||| |||||||||||| ||| |||| || || ||| ||||||| | || | Sbjct 26505 TAGAACTGCGAAAATGGGCAGATATCATGGTGATTGCTCCATTATCAGCAAATACCTTGG 26564 Query 165210 CGAAGATA 165217 | ||| || Sbjct 26565 CTAAGGTA 26572 >seq3117 Length=57653 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || || || ||||||||||| ||||| ||| ||||| ||| | |||||| | ||| Sbjct 28852 GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGC 28911 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || | |||||||| ||||| | || | | ||||| ||| | |||||| Sbjct 28912 CTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGC 28971 Query 269273 GACTTCGCTTG 269283 ||||| || || Sbjct 28972 GACTTTGCGTG 28982 >seq2169 Length=81208 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 104331 TTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAG 104390 |||| || || ||||| || || | || | || || ||||||||||| || || |||| Sbjct 76079 TTCCACCCCTGAGCCTCAGGACCAAGTGAAGCGTCGACTCTTTCTGAATGTTGTAATCAG 76138 Query 104391 ATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAG 104450 || ||||| || ||||| | ||| || |||||||| || ||||| || || || || | Sbjct 76139 CTAACGTTCTCCCATCTTCCAATTGCTTACCAGCAAAGATCAGCCTTTGCTGGTCTGGGG 76198 Query 104451 GTATTCCTTCTTTATCCTGAA 104471 | || || || || ||||||| Sbjct 76199 GAATGCCCTCCTTGTCCTGAA 76219 >seq1263 Length=124836 Score = 87.8 bits (96), Expect = 4e-12 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 269153 GTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGC 269212 || || || || ||||||||||| ||||| ||| ||||| ||| | |||||| | ||| Sbjct 20163 GTCGAGGGCATCTTCTTTTCGGGATCTTTCTGCGCCATCTTCTGGCTCAAGAAACGCGGC 20222 Query 269213 CTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGC 269272 || ||||| || | |||||||| ||||| | || | | ||||| ||| | |||||| Sbjct 20223 CTCATGCCGGGCCTCACTTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTGCACTGC 20282 Query 269273 GACTTCGCTTG 269283 ||||| || || Sbjct 20283 GACTTTGCCTG 20293 >seq890 Length=146018 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 165090 tttATACCGATAAGGATGAATGGAATACTTGGAATAAAATACACGATCCTGTTTTACATA 165149 |||| || ||| | ||||| ||| ||| ||||| | ||| ||||| |||||||| | Sbjct 6073 TTTACACTGATGATGATGAGTGGTCTACCTGGAAGAGGATAGGAGATCCAGTTTTACACA 6014 Query 165150 TAGAGCTAAGAAGATGGGCAGATATGATGTTGATAGCACCCTTAACAGCAAACAGTTTAG 165209 |||| || ||| |||||||||||| ||| |||| || || ||| ||||||| | || | Sbjct 6013 TAGAACTGCGAAAATGGGCAGATATCATGGTGATTGCTCCATTATCAGCAAATACCTTGG 5954 Query 165210 CGAAGATA 165217 | ||| || Sbjct 5953 CTAAGGTA 5946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151197636058172