Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq583 129 5e-25 seq11 120 3e-22 >seq583 Length=179896 Score = 129 bits (142), Expect = 5e-25 Identities = 177/243 (73%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||| || || |||| | | || |||||||| | ||||||| | Sbjct 24262 GCCGGTGGATCCGAACCCACCCTCGCCGCGCACGGTGGCGTCCAGGTCCTCCACCTCCGC 24203 Query 5563 CACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTA 5621 || || || || | | | |||| ||||| |||||| || |||||||| | ||| | Sbjct 24202 GACCTCCGGCGTGGCGATCAC-CTCGACGATCATCTGCGCGATGCGGTCGCCGGGCTTGA 24144 Query 5622 CCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 | |||| || || |||| |||||| || | |||||||| |||||||||||| Sbjct 24143 CGGCGAAGTCCACGT--CCGAGTGGTTGAAGAGGATGACGCCCACCGGGCCGCGGTAGTC 24086 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||||| |||||||| ||||||||||||||| ||||||| | ||| || ||||| || || Sbjct 24085 CGCGTCGATCACGCCGGCGCCCACGTCGATGGAGTGCTTCAGCGCGAGCCCGGACCGCGG 24026 Query 5740 AGC 5742 || Sbjct 24025 CGC 24023 >seq11 Length=544644 Score = 120 bits (132), Expect = 3e-22 Identities = 175/243 (72%), Gaps = 6/243 (2%) Strand=Plus/Minus Query 5503 GCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTC 5562 ||| ||||| ||||| || || |||| | | || |||||||| | ||||||| | Sbjct 38488 GCCGGTGGATCCGAACCCACCCTCGCCGCGCACGGTGGCGTCCAGGTCCTCCACCTCCGC 38429 Query 5563 CACATCGGGGAACGC-AGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTA 5621 || || || || | | | |||| ||||| |||||| || |||||||| | ||| | Sbjct 38428 GACCTCCGGCGTGGCGATCAC-CTCGACGATCATCTGCGCGATGCGGTCGCCGGGCTTGA 38370 Query 5622 CCTCGAAATCGTTGTGGCCGAA--GTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTC 5679 | |||| || || |||| |||||| || | || ||||| |||||||||||| Sbjct 38369 CGGCGAAGTCCACGT--CCGAGTGGTTGAAGAGGATGACCCCCACCGGGCCGCGGTAGTC 38312 Query 5680 GGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGG 5739 ||||| |||||||| || |||||||||||| ||||||| | ||| || ||||| || || Sbjct 38311 CGCGTCGATCACGCCGGCACCCACGTCGATGGAGTGCTTCAGCGCGAGCCCGGACCGCGG 38252 Query 5740 AGC 5742 || Sbjct 38251 CGC 38249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429983071311608