Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq4941 102 7e-17 seq2370 102 7e-17 seq8345 93.3 4e-14 seq212 91.5 1e-13 seq3775 89.7 4e-13 seq990 87.8 2e-12 seq3496 82.4 6e-11 >seq4941 Length=31460 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| ||||| || ||| || ||||||| ||||| Sbjct 20486 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGTGTGCGGCCGTCCTCAAGCTG 20544 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||| ||| || | | ||||||||| || || Sbjct 20545 CTTCCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 20604 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||| | ||||| || | ||||| ||||| || ||||| || || || Sbjct 20605 GGCCTTGACGTTGTCAATGGTGTCCGAGGACTCAACCTCGAGGGTGATGGTCTTGCCAGT 20664 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || ||||| |||||||||||| Sbjct 20665 GAGGGTCTTCACGAAAATCTGCATC 20689 >seq2370 Length=76838 Score = 102 bits (112), Expect = 7e-17 Identities = 149/206 (72%), Gaps = 6/206 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| ||||| || || ||| ||||||| ||||| Sbjct 12548 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGCCCGTCCTCAAGCTG 12490 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | | |||||| ||| || | || |||||||||| || || Sbjct 12489 CTTGCCAGCGAAGATCAGCCTCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTT 12430 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | ||||||| ||| | || ||||| || || Sbjct 12429 GGCCTTGACGTTGTCG--ATGGTGTCAGAAGACTCCACCTCCAGGGTGATGGTCTTGCCA 12372 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||| || || || ||||||||||| Sbjct 12371 GTGAGGGTCTTAACGAAAATCTGCAT 12346 >seq8345 Length=7904 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || ||||||||||||| ||| ||| ||| | ||||| |||||||| ||| | Sbjct 7524 CTCCTTCTGTATGTTGTAATCAG-CAAGTGTGCGCCCATCCTCAAGCTGCTTGCCGGCAA 7582 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | | |||||| ||| || | | ||||||||| || || ||||| Sbjct 7583 AGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTAGCCTTGACGT 7642 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | ||||||| ||| | || ||||| || |||||||| || || | Sbjct 7643 TGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTGA 7702 Query 48714 CAAAAATCTGCAT 48726 |||| |||||||| Sbjct 7703 CAAAGATCTGCAT 7715 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 || || ||| |||||| ||||||||||| ||||| | | || || | ||||||||||| Sbjct 7285 TGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCGAGAGTG-CGGCCATCCTCCAGCTG 7343 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || | ||||||||| ||| || | || |||||||||| || || Sbjct 7344 CTTCCCTGCAAAGATGAGACGCTGCTGGTCCGGGGGGATACCTTCCTTGTCCTGGATCTT 7403 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | | || || |||| ||| ||| | ||| ||||| || || || Sbjct 7404 GGCCTTCACATTGTCAATAGTGTCGGAGCTCTCAACCTCCAGTGTGATGGTCTTGCCAGT 7463 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| |||||||| Sbjct 7464 CAAGGTCTTCACAAAGATCTGCAT 7487 >seq212 Length=258318 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| ||||| ||||||||||| || |||| || | ||||| Sbjct 16693 CACCAAGTGGAGGGTGGATTCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTC 16752 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||||||| | |||| | ||||||||| ||| || | | |||||||| Sbjct 16753 CAGCTGCTTACCAGCAAAAATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTG 16812 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || ||| ||| | | ||||| || | ||||||| ||| | || ||||| || Sbjct 16813 GATCTTCGCCTTCACGTTATCAATGGTGTCCGAAGACTCCACCTCTAAGGTGATGGTCTT 16872 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||| |||||||| Sbjct 16873 GCCAGTAAGCGTCTTCACAAAGATCTGCAT 16902 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| ||||| || || || |||||||||| ||||| || | Sbjct 17395 CTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAA 17453 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||||||| || | | ||||||||| || || ||||| Sbjct 17454 AGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGT 17513 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | ||||| ||| | || ||||| || |||||||| || |||| Sbjct 17514 TGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 17573 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 17574 CGAAGATCTGCATC 17587 >seq3775 Length=45385 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||||| || || ||| |||||| || |||||||| || || | || ||||||| Sbjct 56 CACTAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTC 115 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 ||||||||| || || | || | ||||||||| ||| || | | ||||||||| Sbjct 116 CAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 175 Query 48637 AATTTTCTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 || || ||||| | | || || || || | || ||| ||| | || ||||| Sbjct 176 GATCTTGGCCTTGACGTTGTCG--ATTGTGTCAGATGATTCCACCTCAAGGGTGATGGTC 233 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 ||||||||||| || || ||||| |||||||| Sbjct 234 TTACCGGTGAGGGTCTTGACAAAGATCTGCAT 265 >seq990 Length=138715 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| ||||||||||| || |||| || | ||||||||||||||||| | || Sbjct 23124 TCCTTCTGAATGTTGTAGTCCGCCAGGGTGCGGCCATCCTCCAGCTGCTTACCAGCAAAA 23183 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| ||| || | | ||||||||| || ||| ||| | Sbjct 23184 ATCAGACGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACGTTA 23243 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | ||||||| || | || ||||| || || || || || |||||| Sbjct 23244 TCAATGGTGTCCGAAGACTCCACTTCTAAGGTGATGGTCTTGCCAGTAAGCGTCTTCACA 23303 Query 48716 AAAATCTGCAT 48726 || |||||||| Sbjct 23304 AAGATCTGCAT 23314 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| ||||| || || || |||||||||| ||||| || | Sbjct 23807 CTCCTTCTGGATGTTGTAGTCAGC-AAGGGTGCGGCCGTCCTCCAGTTGCTTGCCAGCAA 23865 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653 | || | ||||||||||||| || | | ||||||||| || || ||||| Sbjct 23866 AGATGAGACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGT 23925 Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | ||||| || | ||||| ||| | || ||||| || |||||||| || |||| Sbjct 23926 TGTCAATGGTGTCCGAGGACTCAACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCA 23985 Query 48714 CAAAAATCTGCATC 48727 | || ||||||||| Sbjct 23986 CGAAGATCTGCATC 23999 >seq3496 Length=52490 Score = 82.4 bits (90), Expect = 6e-11 Identities = 138/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || |||||||||||||||||||| || | Sbjct 27209 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAA 27268 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 || | |||||||| ||| ||| | | ||||||||| || || ||| | | Sbjct 27269 GATCAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 27328 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || ||||| || | |||||| ||| | || || || || || || || || ||| Sbjct 27329 GTCG--ATGGTGTCCGAGGACTCCACCTCCAGCGTGATCGTCTTGCCCGTCAGGGTCTTC 27386 Query 48713 ACAAAAATCTGCATCGTG 48730 || || ||||||||| || Sbjct 27387 ACGAAGATCTGCATCTTG 27404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421181331407609