Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq691 313 3e-80 seq7208 302 6e-77 seq2365 293 3e-74 seq160 122 1e-22 >seq691 Length=167025 Score = 313 bits (346), Expect = 3e-80 Identities = 354/473 (75%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| | || ||||| || || | ||| | |||||||| || || ||| | ||| || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAAC 135586 ||||||| || | || ||||| || || |||||||||| |||| || || | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 135587 GCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATAT 135646 || ||||| | || || || || || ||||||||||| ||||||||||| ||| |||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 135647 AATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATG 135706 ||||||||||||||| | ||| | || | || ||| ||| |||| | ||| ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 130945 Query 135707 GGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTAC 135766 ||||| ||||||||||| || | | |||||||||| ||||||||| ||| || || Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 135767 TCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCT 135826 ||||| |||||||| |||||||||||||||||| || | ||| | | || ||||| | Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 135827 TTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAG 135886 ||| |||||||||| | | || || ||||| ||||| |||| ||| |||| ||| || Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 135887 GCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGT 135939 | ||| |||||||| || |||||||| || |||||||| || || ||||| || Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 130712 >seq7208 Length=13341 Score = 302 bits (334), Expect = 6e-77 Identities = 432/599 (72%), Gaps = 12/599 (2%) Strand=Plus/Plus Query 135419 TGGTTTGGAACGCTGATGATTCCTACTCTTCTCGCAGCTGCTA--TCTGC-TTTATTGTT 135475 |||||||| ||||||| ||||| ||| | | |||| | |||| |||||| | Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGA--CTGCAACCTCTGTATTTATTATC 1777 Query 135476 GCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCT 135535 || |||||||| || ||||| || |||||||| || || | || |||||| ||||||| Sbjct 1778 GCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCT 1837 Query 135536 CTAATGTACGGAAAT-AACATCATCTCTGGTGCTGTTATCCCTTCT--AGCAACGCCATC 135592 |||| || |||| || || ||||||||||| |||| |||| | ||| || ||| Sbjct 1838 TTAATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCA--GCGATC 1895 Query 135593 GGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGT 135652 | | || || || || | || ||||| || | | ||||||| ||| |||| |||||| Sbjct 1896 AGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGT 1955 Query 135653 GGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGC 135712 ||||||| | | ||| | || | |||||| | | ||||| | ||| |||||||| Sbjct 1956 GGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGT 2015 Query 135713 GAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCC 135772 || |||||||| || | |||||| ||| ||||||||| ||| | || ||| | Sbjct 2016 GAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACT 2075 Query 135773 CCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGT 135832 |||||||| |||||||| ||| ||||| | ||||||| ||| ||||| ||| | Sbjct 2076 CCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCT 2135 Query 135833 GATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAA 135892 |||||||| | | || || ||||| ||||| |||| ||| ||| ||||||||| | Sbjct 2136 AATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAG 2195 Query 135893 CACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCT 135952 |||||||| || | |||||| || ||||| || || || ||||| || ||||| ||||| Sbjct 2196 CACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC- 2254 Query 135953 CTGTTCTCTGCTATGCATGGATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGA 136011 || ||| |||||||||| | || | || ||||||||| | | | ||||| ||||| Sbjct 2255 CTATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGA 2313 >seq2365 Length=77851 Score = 293 bits (324), Expect = 3e-74 Identities = 346/468 (74%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 135467 TTTATTGTTGCTTTCATCGCTGCACCTCCCGTCGATATTGACGGCATCCGCGAACCTGTT 135526 |||||| | || |||||||| || ||| | |||||||| || || | ||| ||| || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 135527 GCTGGTTCTCTAATGTACGGAAATAACATCATCTCTGGTGCTGTTATCCCTTCTAGCAAC 135586 ||||||| || | || ||||| || || ||||||||||| || | || ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCC-------AAC 13540 Query 135587 GCCATCGGCCTTCACTTCTATCCCATCTGGGAAGCTGCTTCTCTTGATGAGTGGCTATAT 135646 | || | || || || || || ||||||||| ||||||||||| ||| |||| Sbjct 13541 TCGATTG-----CATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 135647 AATGGTGGTCCTTATCAACTAGTGGTCTTCCACTTCCTTATCGGTGTCTTCTCTTACATG 135706 ||||||||||||||| | ||| | || | |||||| | | ||||| | ||| ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 135707 GGTCGCGAGTGGGAACTCTCTTACCGACTGGGTATGCGCCCTTGGATTTGTGTCGCTTAC 135766 ||||| ||||||||||| || | | |||||||||| ||||||||| ||| || | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 135767 TCAGCCCCTGTTGCCGCTGCTACTGCTGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCT 135826 ||||| |||||| | |||||||||||||||||| || | ||||| |||| ||||| | Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 135827 TTCAGTGATGGTATGCCGCTTGGCATTTCTGGAACTTTTAACTACATGCTTGTTTTCCAG 135886 ||| |||||||||||| | || || ||||| ||||| |||| ||| |||| ||| || Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 135887 GCAGAACACAACATTCTCATGCATCCTTTCCACATGTTGGGAGTTGCT 135934 | ||| |||||||| || |||||||| || |||||||| || || ||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 122 bits (134), Expect = 1e-22 Identities = 148/201 (74%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 136082 GGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACAC 136141 ||||| || ||||| | |||||||||||||| ||||||||||||||||| ||||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 136142 TTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACG 136201 ||| | ||||| |||||||| || || |||||||| |||| | || | ||| Sbjct 255191 ---TTCTTGGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 136202 ATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGT 136261 ||||| |||||||| ||||| ||||| |||||||| || | || | ||||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 136262 GTACTCAACACCTGGGCAGAT 136282 || | || || ||||| ||| Sbjct 255308 GTTATTAATACTTGGGCTGAT 255328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627861174793600