Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq7208 257 5e-64 seq691 248 3e-61 seq2365 242 1e-59 seq160 111 5e-20 >seq7208 Length=13341 Score = 257 bits (284), Expect = 5e-64 Identities = 392/553 (71%), Gaps = 4/553 (1%) Strand=Plus/Plus Query 19335 TGGTTTGGAGTACTTATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCC 19394 |||||||| || | ||||| ||| |||| | |||| || || ||||| ||||| Sbjct 1721 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTGCAACCTCTGTATTTATTATCGCC 1780 Query 19395 TTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 19454 || |||||||| || || |||||||| ||||| || | |||||| |||| || || ||| Sbjct 1781 TTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTTA 1840 Query 19455 ATGTACGGAAA-CAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACT 19513 || || |||| ||||||||| ||||| || | |||| || || || || | Sbjct 1841 ATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGATT 1900 Query 19514 GCACTTTTATCCGATCTGGGAAGCCGGCACTT-TAGATGAGTGGTTATACAACGGCGGTC 19572 ||| ||||| || | || ||||| |||| || | ||||| ||||||||||| || |||| Sbjct 1901 GCATTTTTACCCACTTTGAGAAGC-GGCATTTGTTGATGAATGGTTATACAATGGTGGTC 1959 Query 19573 CATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGT 19632 | | | | || |||| | ||||||||| | || ||||| || ||| | | | Sbjct 1960 CTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAAT 2019 Query 19633 GGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCAC 19692 ||||||| || | || || | | | || ||||| | || | ||| || | || Sbjct 2020 GGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTG 2079 Query 19693 TATCAGCAGCTCTTGCTGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATG 19752 | |||| ||| ||| | || | | ||||| ||| ||||| |||||| | ||| Sbjct 2080 TTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATG 2139 Query 19753 GTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACA 19812 ||||| || | || |||||||||||||| ||||||||| |||||||| ||| | |||| Sbjct 2140 GTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACA 2199 Query 19813 ATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTT 19872 | ||||||| |||||| || ||||| | ||||| ||||| |||||||| || || || | Sbjct 2200 ACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTAT 2258 Query 19873 TCTCTGCTATGCA 19885 || ||||||||| Sbjct 2259 TCAATGCTATGCA 2271 >seq691 Length=167025 Score = 248 bits (274), Expect = 3e-61 Identities = 351/487 (72%), Gaps = 5/487 (1%) Strand=Plus/Minus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| ||||||| || ||||| | || ||||||| ||||| || || |||| || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAG-CAGTAGTTCCAAGCTCCAA 19501 | || || ||| | || |||||||||||||| ||||| | || || |||||| | Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTA-TTCCAACTTGTGC 131065 Query 19502 TGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATA 19561 || || ||| |||| ||||| || || |||||||| | || | ||||| |||||||| Sbjct 131064 GGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATA 131005 Query 19562 CAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGC 19621 ||| || ||||| ||| | || |||| | || |||||| | | ||||| || Sbjct 131004 CAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTTGT-GTAGCTTGTTATAT 130946 Query 19622 TGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATA 19681 ||| | |||||||||| || | | | || ||| || ||||| || ||||| Sbjct 130945 GGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATA 130886 Query 19682 TACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGA 19740 | |||| || | |||| ||| |||||| ||||| | ||||| | | || ||||| | Sbjct 130885 TTCAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTTACGCTATCGGTCAAGGAA 130827 Query 19741 GTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCC 19800 |||| |||||||||| || | || |||||||||||||| ||||||||| | |||||| Sbjct 130826 GTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCG 130767 Query 19801 AAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCTGGCGTATTCG 19860 | | ||| ||||| |||||||||||||| || |||||| | ||||| ||||| ||| | Sbjct 130766 AGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTAGCTG 130707 Query 19861 GTGGATC 19867 ||| ||| Sbjct 130706 GTGCATC 130700 >seq2365 Length=77851 Score = 242 bits (268), Expect = 1e-59 Identities = 337/469 (72%), Gaps = 16/469 (3%) Strand=Plus/Plus Query 19383 TTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 19442 ||||| ||||||| |||||||| | | ||||||| ||||| || | ||||| || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCTTC--CAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 19443 TCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAAT 19502 | || || ||| | || |||||||||||||| ||||| || | |||||| ||| Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAA-CTC---- 13542 Query 19503 GCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATAC 19562 || |||| ||||| || || |||||| | || | ||||| ||||||||| Sbjct 13543 -------GATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 19563 AACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATAGGAGTAGCAGCATACGCT 19622 || || ||||| ||| | || |||| | ||||||||| | || ||||| || Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 19623 GGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCATGGATATTCGTAGCATAT 19682 ||| | |||||||||| || | | | || ||| || ||||| || ||| || Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 19683 ACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCG-TTTACCCATTTGGGCAAGGGAG 19741 |||| || | ||||| ||| |||||| ||||| | ||||||| |||| ||||| || Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGT-TTTCTTGATTTACCCTATTGGTCAAGGAAG 13774 Query 19742 TTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCA 19801 ||| ||||||||||||| | || |||||||||||||| ||||||||| | |||||| | Sbjct 13775 TTTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGA 13834 Query 19802 AGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGGTGTTGCT 19850 | ||| ||||| |||||||||||||| || |||||| | ||||| ||| Sbjct 13835 GGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 13883 >seq160 Length=286096 Score = 111 bits (122), Expect = 5e-20 Identities = 127/170 (75%), Gaps = 3/170 (2%) Strand=Plus/Plus Query 19996 ACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTAC 20055 |||| || ||||| |||| || || ||||||||| |||||| || ||||||||||||| Sbjct 255129 ACGGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTAC 255188 Query 20056 ATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCA 20115 | |||| | ||| | | || || || || || ||| | || | | || || | | Sbjct 255189 ACTTCT---TGGCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTA 255245 Query 20116 CTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT 20165 ||||||| |||||||| |||||||| || || ||||| || ||||||||| Sbjct 255246 CTATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 255295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144418257244404