Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq691 242 6e-59 seq7208 233 3e-56 seq2365 219 7e-52 seq160 104 4e-17 >seq691 Length=167025 Score = 242 bits (268), Expect = 6e-59 Identities = 337/471 (72%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 211663 TTTATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTA 211722 ||||| | || ||||| ||||| | ||| | ||||| || || || || | || | Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 211723 GCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 211782 |||||| || | ||||| ||||| || |||||||||| || ||||| ||| Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 211783 GCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTAC 211842 || ||||| || || || || || || |||||||| ||| |||||||||| ||| | ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 211843 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATG 211902 |||||||||||||| || | | | | || ||| ||| | | | || ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 130945 Query 211903 GGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTAT 211962 || | ||||||||||| | | || | ||||||| ||||||||| |||||| ||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 211963 TCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCA 212022 ||||| ||||| |||| ||| ||||| ||| | ||||| | ||||||| || Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 ||||| || |||||| ||||||| || || || || |||||||| ||| | |||||| | Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGT 212133 | ||| || |||||||||||||| ||||| || ||| |||||| || ||| Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 130714 >seq7208 Length=13341 Score = 233 bits (258), Expect = 3e-56 Identities = 396/567 (70%), Gaps = 5/567 (1%) Strand=Plus/Plus Query 211615 TGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGC 211673 |||||||||||| | |||||||| | ||| | | ||||||| | ||||| | || Sbjct 1721 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACCTCTGTATTTATTATCGC 1779 Query 211674 ATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATT 211733 ||||||||||| ||||| || ||||| || || || | ||| || || |||||| || Sbjct 1780 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTT 1839 Query 211734 CATGTATGGTAA-CAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTT 211792 || ||| | || ||| || ||||||||||| || |||| | ||| || ||| | | Sbjct 1840 AATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGAT 1899 Query 211793 TACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTC 211852 | || || || || | || ||||| ||| | ||||||| ||| | ||||||||||||| Sbjct 1900 TGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTC 1959 Query 211853 CTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGT 211912 ||| || | | | | |||||| | | || | | || ||||| | | | Sbjct 1960 CTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAAT 2019 Query 211913 GGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTG 211972 |||||||| | |||| |||| |||||||||||| |||| | |||||| | |||| Sbjct 2020 GGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTG 2079 Query 211973 TATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACG 212032 | |||| ||| ||| | ||| | | ||||| ||||| || || || | | Sbjct 2080 TTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTAATG 2139 Query 212033 GTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATA 212092 ||||| ||||||| || || || || |||||||| ||| |||||||| ||| | || | Sbjct 2140 GTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGCACA 2199 Query 212093 ACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTAT 212152 ||||||||| ||| ||||| || || |||||| || ||| | ||||| || | ||| Sbjct 2200 ACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGTTC-CTAT 2258 Query 212153 TCTCTGCTATGCACGGTTCTCTTGTTA 212179 || ||||||||| |||| |||| || Sbjct 2259 TCAATGCTATGCATAGTTC-CTTGGTA 2284 >seq2365 Length=77851 Score = 219 bits (242), Expect = 7e-52 Identities = 328/467 (70%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 211663 TTTATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTA 211722 ||||| | || ||||||||||| ||| | ||||| || || || | || || | Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 211723 GCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 211782 |||||| || | ||||| ||||| || ||||||||||| || ||||| || | Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACTCGA--- 13544 Query 211783 GCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTAC 211842 || || || || || || |||||| ||| |||||||||| ||| | ||| Sbjct 13545 ---------TTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 211843 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATG 211902 |||||||||||||| || | | | | |||||| | | || | | || ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 211903 GGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTAT 211962 || | ||||||||||| | | || | ||||||| ||||||||| |||||| || Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 211963 TCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCA 212022 ||||| ||||| ||||| ||| ||||| ||| | ||||||| | ||||| || Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 ||||| || |||||||||||||| || || || || |||||||| ||| | |||||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGC 212129 | ||| || |||||||||||||| ||||| || ||| |||||| || Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 104 bits (114), Expect = 4e-17 Identities = 144/201 (72%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 212278 GGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACAC 212337 || || || ||| || | |||||||| ||||| ||||||||| | ||||||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 212338 TTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACA 212397 ||||| || | |||||||| | | | ||||| || || | ||||| | || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 212398 ATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAG 212457 |||||||||||||||||||| ||||| ||||||||||| || |||||| |||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 212458 GTTGTTCCTACTTGGGGTGAT 212478 ||| || |||||||| |||| Sbjct 255308 GTTATTAATACTTGGGCTGAT 255328 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807417824766040