Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq691 201 1e-46 seq2365 188 8e-43 seq7208 187 3e-42 seq160 131 2e-25 >seq691 Length=167025 Score = 201 bits (222), Expect = 1e-46 Identities = 328/471 (70%), Gaps = 1/471 (0%) Strand=Plus/Minus Query 170759 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 170818 || ||| | || ||||| || || | |||| | ||||| || || || | | || || Sbjct 131183 TTTATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGATGGTATTCGCAAGCCTATT 131124 Query 170819 GCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAAC 170878 |||||||| | ||||| ||||| || |||||||||| | ||||| ||| Sbjct 131123 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGACATTATTCCAACTTGTGCG 131064 Query 170879 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAC 170938 || || ||||| || || || || || |||||||| || || | || || ||||| ||| Sbjct 131063 GCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCTCTTGATGAATGGTTATAC 131004 Query 170939 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 170998 || || |||||||| || || || || | || ||| ||| | | | || || ||| Sbjct 131003 AATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTC-TTACTTGTGTAGCTTGTTATATG 130945 Query 170999 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 171058 ||| | |||||||||| | | | || || ||| |||||||| ||| ||||| Sbjct 130944 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCATAT 130885 Query 171059 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 171118 ||||| ||||| | || || ||| || ||| | | || | ||||||| || Sbjct 130884 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACGCTATCGGTCAAGGAAGT 130825 Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 ||||||||||||||| | |||| ||||| ||||| |||||||| ||| | || ||| | Sbjct 130824 TTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 130765 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGT 171229 | ||| |||||||| || ||||| || || || ||| ||||||||| ||| Sbjct 130764 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGT 130714 >seq2365 Length=77851 Score = 188 bits (208), Expect = 8e-43 Identities = 321/467 (69%), Gaps = 14/467 (3%) Strand=Plus/Plus Query 170759 TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTT 170818 || ||| | || |||||||| ||| |||| | ||||| || || || || || || Sbjct 13430 TTTATTATCGCCTTCATCGCAGCT--TCCAATAGATATTGATGGTATTCACGAGCCTATT 13487 Query 170819 GCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAAC 170878 |||||||| | ||||| ||||| || ||||||||||| | ||||| || Sbjct 13488 TTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTTTTCCAACTC----- 13542 Query 170879 GCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTAC 170938 |||| || || || || || |||||| || || | || || ||||| ||| Sbjct 13543 -------GATTGCATTTTTACCCAATTCAGGAAGCTGCATCTCTTGATGAATGGTTATAC 13595 Query 170939 AACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATG 170998 || || |||||||| || || || || | |||||| | |||| | || || ||| Sbjct 13596 AATGGTGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 13655 Query 170999 GGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATAC 171058 ||| | |||||||||| | | | || || ||| |||||||| ||| ||| | Sbjct 13656 GGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCCTTGGATTGCTGTTGCAAAT 13715 Query 171059 TCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCA 171118 ||||| ||||| || || || ||| || ||| | | || || | ||||| || Sbjct 13716 TCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGT 13775 Query 171119 TTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAA 171178 ||||||||||||||||| |||| ||||| ||||| |||||||| ||| | || ||| | Sbjct 13776 TTCTCTGATGGTATGCCTTTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCGAG 13835 Query 171179 GCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGC 171225 | ||| |||||||| || ||||| || || || ||| ||||||||| Sbjct 13836 GTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGC 13882 >seq7208 Length=13341 Score = 187 bits (206), Expect = 3e-42 Identities = 404/598 (68%), Gaps = 10/598 (2%) Strand=Plus/Plus Query 170711 TGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGC 170769 ||||||||||| || |||||||| | ||| | ||||| | || || ||| | || Sbjct 1721 TGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACTGCAACCTCTGTATTTATTATCGC 1779 Query 170770 ATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTT 170829 |||||||| ||||||||||| ||||| || || || || || ||| |||||||| Sbjct 1780 CTTCATCGCAGCTCCTCCAGTAGATATTGATGGTATTCATGAGCCTGTTTTTGGTTCTTT 1839 Query 170830 CTTATATGGTAA-CAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGAT 170888 | ||| | || ||| || ||||||||||| | |||| | ||| || || ||| Sbjct 1840 AATTTATAGAAAACAATATTATCTCTGGTGCCATTATTCCTTTTTCTGCAGCGATCAGAT 1899 Query 170889 TACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTC 170948 | || || || || | || ||||| || | | || || ||||| ||||| || |||| Sbjct 1900 TGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTGATGAATGGTTATACAATGGTGGTC 1959 Query 170949 CTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGT 171008 ||| || || || || | |||||| | |||| | || || |||||| | | | Sbjct 1960 CTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAAT 2019 Query 171009 GGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTG 171068 ||||||| | | | || | | | |||||||| ||| | || ||| | |||| Sbjct 2020 GGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGATTGTTGTTTCCTATTCAACTCCTG 2079 Query 171069 TATCTGCAGCATTTGCAG---TATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTG 171125 | |||||| | ||| | ||| | | || || ||||| || || ||| Sbjct 2080 T---TGCAGCTGCTACAGCTATTTTCTTAATCTACCCTACTGGTCAAGGAAGTTTTTCTA 2136 Query 171126 ATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAAC 171185 |||||||| | |||| ||||| ||||| |||||||| ||| || ||||| ||| | | Sbjct 2137 ATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTATGGCTGTATTCCAGGCACAGC 2196 Query 171186 ACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTC 171245 ||||||| || | ||| || || || || ||||||||| ||| | ||||| ||| | Sbjct 2197 ACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAGCTGGTGTATTCGGCGGT-TCC 2255 Query 171246 TCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGA 171303 | |||| ||| ||||| |||| | || || ||| | | |||| ||||| ||||| Sbjct 2256 TATTCAATGCTATGCATAGTTCCTTGGTAACCTCTAGTTTGCTCAGGGAGACCACTGA 2313 >seq160 Length=286096 Score = 131 bits (144), Expect = 2e-25 Identities = 130/168 (77%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 171374 GGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACAC 171433 || || || ||| ||||||||||||| ||||| ||||||||||||||||| |||||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 171434 TTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACA 171493 ||||| |||| | |||||||| | | ||||| || || | ||||| |||| Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 171494 ATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGAT 171541 |||||||||||||| || || ||||| ||||||||||| || || ||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGAT 255295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570171790148760