Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq2732 95.1 3e-14 seq5432 91.5 4e-13 seq8286 89.7 1e-12 seq6533 89.7 1e-12 seq3116 86.0 2e-11 seq2445 86.0 2e-11 >seq2732 Length=66941 Score = 95.1 bits (104), Expect = 3e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 371111 AATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTC 371170 ||| ||| ||||| ||||||| || |||| ||||| |||||||||| ||| ||||| || Sbjct 60695 AATCATGCAATCCCTCTCCATTTCTCCAAAACGGAGGCCACCATCGCCTGAACGTCCCTC 60754 Query 371171 TGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAAC 371230 || ||| ||||| |||| ||| | ||| || | || |||| ||| ||| | Sbjct 60755 TGCTGGTTGACGTGTGAGTATCTGAACAGGACCACGACCTCTTGAATGTATCTTATCATC 60814 Query 371231 TACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATAG 371280 |||||||||||||| | || || || ||| ||| |||||||||| Sbjct 60815 CACCATGTGCTTGAGTCTTTGGTAGTACGTGGGACCAAGGAAAATCATAG 60864 >seq5432 Length=26008 Score = 91.5 bits (100), Expect = 4e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 371111 AATGATGGAATCCTTCTCCATCTCACCAATTCGGAGACCACCATCGCGTGACCGTCCTTC 371170 ||| || ||||| ||||||| ||||| | |||||||||||||| ||||| || ||||| Sbjct 6697 AATCATACAATCCCTCTCCATTTCACCGAAACGGAGACCACCATCACGTGAACGCCCTTC 6638 Query 371171 TGTTGGCGCGCGTGTAAGTAGCTGTTGTGCACCGCGGTTGCGTGCATGTGACTTGTCAAC 371230 || ||| || || |||| ||| | ||| || | || |||| ||| ||| | Sbjct 6637 TGCTGGTTGTCGGGTGAGTATCTGGACAGGACCACGACCTCTTGAATGTATCTTATCATC 6578 Query 371231 TACCATGTGCTTGAGGCGCTGATAATAACACGGAGCAATAAAAATCATAG 371280 |||||||||||||| | || ||||| ||| | | |||||||||| Sbjct 6577 CACCATGTGCTTGAGTCTTTGGTAATATGTGGGACCCAAGAAAATCATAG 6528 >seq8286 Length=8159 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | |||||| | || | Sbjct 769 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTCTGAAGGAATGTGCTGTCATAAGC 828 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG-CACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | |||||| |||| | ||| | ||||| || Sbjct 829 AAATCTGCTGGAGGAATTGGTGTTTCAGTTCACAATATTCGAGCCACTG-GTAGTTATAT 887 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || |||||| | ||||| ||| | ||||| || | |||| Sbjct 888 TCGGGGAACAAATGGAACTTCCAATGGGATTGTTCCTATGTTACGTGTTTTCAATGATAC 947 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || ||||| || || | |||||| Sbjct 948 TGCTCGTTATGTTGATCAAGGTGGCGGCAAAAG-AAAGGG 986 >seq6533 Length=17200 Score = 89.7 bits (98), Expect = 1e-12 Identities = 154/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 ||||| || || ||| ||||| |||| ||| || || ||| | |||||| | || | Sbjct 770 ATGAAAGATGACAGCATTGAGGGAATCTATGATACTCTGAAGGAATGTGCTGTCATAAGC 829 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || ||| || ||||||||||| || | |||||| |||| || || | ||||| || Sbjct 830 AAATCTGCTGGAGGAATTGGTGTTTCAGTTCACAATATTCGAGCTACTG-GTAGTTATAT 888 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 ||| || ||| ||| || |||||| | ||||| ||| | ||||| || | |||| Sbjct 889 TCGGGGAACAAATGGAACTTCCAATGGGATTGTTCCTATGTTACGTGTTTTCAATGATAC 948 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGG 363840 ||| | || || || || ||||| || || | |||||| Sbjct 949 TGCTCGTTATGTTGATCAAGGTGGCGGCAAAAG-AAAGGG 987 >seq3116 Length=58019 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| | ||||| | | || |||||||||||||| || ||||||||||| Sbjct 20373 CAGTTTTATGTTGAGAACGGGGAGTTATCCTGCCAAATGTATCAACGTTCTGCTGATATG 20314 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCA 111788 |||||||| ||||| || || |||||| Sbjct 20313 GGTCTTGGAGTTCCATTCAACATTGCA 20287 >seq2445 Length=74669 Score = 86.0 bits (94), Expect = 2e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||||||||| | ||||| | | || |||||||||||||| || ||||||||||| Sbjct 13432 CAGTTTTATGTTGAGAACGGGGAGTTATCCTGCCAAATGTATCAACGTTCTGCTGATATG 13373 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCA 111788 |||||||| ||||| || || |||||| Sbjct 13372 GGTCTTGGAGTTCCATTCAACATTGCA 13346 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303126340342238