Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq6884 122 6e-23 seq463 109 4e-19 seq853 104 2e-17 seq8279 87.8 1e-12 >seq6884 Length=15222 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| |||||||||||||||||||||| ||||||||| |||| || |||||||| Sbjct 10616 AAGCCCATTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGT 10675 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 10676 TAATCTATTCATGCGCGTCACTAATTAGATGACGA 10710 >seq463 Length=196461 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | |||| || | |||||||| |||||| || ||||||||||||| | Sbjct 43224 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCC 43165 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || || | || || | ||| || || ||||| || || || || || || | ||| Sbjct 43164 AATGTGCGCCCATCCTCGAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTGGTGGG 43105 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || ||| ||||||||| | || || ||| || ||||| Sbjct 43104 ATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACC 43045 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | |||||||| || || || | || ||||| || ||||||||| Sbjct 43044 TCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCATG 42997 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| || | ||| | || | ||||| || |||||| || || ||||| || | | Sbjct 42996 CCACCCCTAAGACGAAGGACAAGGTGAAGGGTAGACTCCTTCTGGATGTTGTAGTCTGCC 42937 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || ||||| || || || || | || || || | |||| Sbjct 42936 AGTGTGCGGCCGTCTTCAAGCTGCTTTCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 42877 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| ||||||||| ||| ||| ||| ||||| | | ||| || || ||||| Sbjct 42876 ATGCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATAGTGTCAGAGCTCTCAACC 42817 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || ||||| || || || || || | ||| ||||| ||||||||||| Sbjct 42816 TCCAATGTTATTGTCTTGCCTGTAAGGGTCTTCACAAATATCTGCAT 42770 Score = 82.4 bits (90), Expect = 5e-11 Identities = 163/240 (68%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| |||| || | || | || ||||| |||||| || || ||||||| Sbjct 42544 CATT-CCACCCCTCAGGCGAAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAAT 42486 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 ||| ||| ||| | || |||| || || || ||||| || || | || || || | Sbjct 42485 CAGCCAATGTACGGCCATCTTCTAGCTGCTTACCAGCAAAAATGAGCCTCTGCTGGTCCG 42426 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 ||||| || || || ||| ||| || ||| ||||| | || || || || | Sbjct 42425 GGGGGATACCCTCCTTATCCTGAATCTTGGCCTTAACATTGTTGATCGTGTCCGAGCTCT 42366 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTTACA 38325 |||| || | || || || || || |||| || || |||||||||||||| | || || Sbjct 42365 CAACCTCGAGAGTGATGGTCTTGCCAGTCAGTGTCTTGACGAATATCTGCATCTGTTTCA 42306 >seq853 Length=150616 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||| || ||| ||||| |||| || |||||| | Sbjct 89592 AAGCCCGTTCCCTTGGCTGTGGTTTTCCTGGATTGTAGAAAGGGACAGTGGGAATCTCAT 89651 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 || ||| |||||||||||||||||| ||||||||| Sbjct 89652 TATTCCATTCATGCGCGTCACTAATGAGATGACGA 89686 >seq8279 Length=8219 Score = 87.8 bits (96), Expect = 1e-12 Identities = 155/228 (68%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || ||||| | |||| || | |||||||| |||||| || ||||||||||||| | Sbjct 6959 CCTCCTCTGAGGCGCAGGACAAGGTGAAGAGTAGACTCCTTCTGGATATTGTAATCAGCC 6900 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || || | ||| || || ||||| || || || || || || ||| Sbjct 6899 A-----------TCCTCAAGTTGCTTCCCAGCAAAGATGAGTCGCTGCTGGTCTAGTGGG 6851 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || ||| ||||||||| | || || ||| || ||||| Sbjct 6850 ATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTATCGATTGTGTCTGAGCTCTCAACC 6791 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | |||||||| || || || | || ||||| || ||||||||| Sbjct 6790 TCAAGAGTAATAGTCTTTCCAGTGAGAGTCTTCACAAAGATCTGCATG 6743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334891645762079