Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq990 111 1e-19 seq8345 104 2e-17 seq463 104 2e-17 seq1245 87.8 2e-12 seq846 87.8 2e-12 seq1412 84.2 2e-11 seq783 84.2 2e-11 >seq990 Length=138715 Score = 111 bits (122), Expect = 1e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || ||||||| | ||||||||||| || Sbjct 23314 ATGCAGATCTTTGTGAAGACGCTTACTGGCAAGACCATCACCTTAGAAGTGGAGTCTTCG 23255 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | || ||||| || ||| ||||| || || || || || ||||| Sbjct 23254 GACACCATTGA-TAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 23196 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | |||||||| || || || | || |||| ||||| ||| || ||||| Sbjct 23195 GCAGCGTCTGATTTTTGCTGGTAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAA 23136 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||||| || ||||| || || || || ||||| Sbjct 23135 CATTCAGAAGGAATCTACCCTCCACTTGGTGCT 23103 >seq8345 Length=7904 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | ||||| || ||||||| | || |||||||| ||| Sbjct 7715 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTGGAGTCTTCT 7656 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || | ||| || ||| ||||| || || || || || ||||| Sbjct 7655 GACACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 7596 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || |||| ||||||||||| || | || |||| ||||| | | |||||||| Sbjct 7595 CAGAGGCTTATCTTTGCCGGCAAGCAGCTTGAGGATGGGCGCACACTTGCTGATTACAAC 7536 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || || | ||||| Sbjct 7535 ATACAGAAGGAGTCTACCCTCCACCTGGTGCT 7504 >seq463 Length=196461 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || | || || | || || ||| || Sbjct 42998 ATGCAGATCTTTGTGAAGACTCTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCA 43057 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| ||| ||| ||||| ||||| || ||||| ||||| Sbjct 43058 GACACAATCGATAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATCCCACCAGACCAG 43117 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||| || || ||| | || |||| ||||| ||| ||||||||| Sbjct 43118 CAGCGACTCATCTTTGCTGGGAAGCAACTCGAGGATGGGCGCACATTGGCTGATTACAAT 43177 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || || || || | || || | || |||||||| Sbjct 43178 ATCCAGAAGGAGTCTACTCTTCACCTTGTCCTGCGCCTCAGAGGAGG 43224 >seq1245 Length=124263 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || ||||| || ||||| || || | |||||||| || || ||||| ||| Sbjct 66978 GACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 66919 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | || | | ||||| || ||||||||||| || || || || || || || Sbjct 66918 GATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGGTCCTG 66859 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 66858 AGGCTCAGAGGTGGAA 66843 >seq846 Length=151982 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| || || ||||| || ||||| || || | |||||||| || || ||||| ||| Sbjct 29491 GACAAGGAGGGCATTCCCCCAGACCAGCAAAGGCTGATTTTTGCTGGTAAGCAATTGGAA 29432 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| | || | | ||||| || ||||||||||| || || || || || || || Sbjct 29431 GATGGAAGAACATTAGCTGATTATAACATTCAAAAAGAGTCGACACTTCACTTGGTCCTG 29372 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| ||||| |||| Sbjct 29371 AGGCTCAGAGGTGGAA 29356 >seq1412 Length=113785 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||||||||| || || || ||||| | || ||||| ||||| || | || Sbjct 75103 GATAAGGAAGGGATTCCTCCGGATCAGCAGCGTTTGATATTTGCTGGCAAGCAGCTGGAG 75044 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| ||||| || || || || ||||| || || || Sbjct 75043 GATGGACGCACGCTGGCTGACTACAACATTCAGAAGGAGTCGACTCTACACTTGGTACTC 74984 Query 25212 AGGCTAAGAGGAGG 25225 ||||| ||||| || Sbjct 74983 AGGCTCAGAGGTGG 74970 >seq783 Length=160263 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 || || ||||||||||| || || || ||||| | || ||||| ||||| || | || Sbjct 81248 GATAAGGAAGGGATTCCTCCGGATCAGCAGCGTTTGATATTTGCTGGCAAGCAGCTGGAG 81307 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| ||||| ||| || ||||| ||||| || || || || ||||| || || || Sbjct 81308 GATGGACGCACGCTGGCTGACTACAACATTCAGAAGGAGTCGACTCTACACTTGGTACTC 81367 Query 25212 AGGCTAAGAGGAGG 25225 ||||| ||||| || Sbjct 81368 AGGCTCAGAGGTGG 81381 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433256128353335