Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq691 221 1e-52 seq7208 219 5e-52 seq2365 203 4e-47 seq160 163 3e-35 >seq691 Length=167025 Score = 221 bits (244), Expect = 1e-52 Identities = 348/493 (71%), Gaps = 4/493 (1%) Strand=Plus/Minus Query 166129 TTGGCAGCAACCATCTGTTTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGAT 166188 ||| | ||||| || ||| || |||| ||| | || || | ||| | ||||| ||| Sbjct 131200 TTGACCGCAACTTCCTATTT-ATTATCGCCTTCATTGCAGCCCTTCCAATAGATATTGAT 131142 Query 166189 GGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCT 166248 || || || |||| | || ||| || | ||||| ||||| || |||||||||| Sbjct 131141 GGTATTCGCAAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGAC 131082 Query 166249 GTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCA 166308 || | || | | || || || | || || || || || |||||||| ||||| Sbjct 131081 ATTATTCCAACTTGTGCGGCGATCGGATTGCATTTTTACCCAATTTGGGAAGCTGCATCT 131022 Query 166309 CTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATC 166368 |||||||||||| | || || |||||||||| |||| | || | || ||| | | Sbjct 131021 CTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAGTTCTTACTT 130962 Query 166369 G-GCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCC 166427 | | | || || || ||||||||||| |||||| | || | | || ||||||| ||| Sbjct 130961 GTGTAGCT-TGT-TATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGTATGCATCC 130904 Query 166428 TTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTA 166487 ||||||| || ||||| || || ||||||||||| || | || || ||| || | || Sbjct 130903 TTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTA 130844 Query 166488 TCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAA 166547 || |||||||||| ||||||||| | ||| | | || ||| ||| || ||||| Sbjct 130843 CGCTATCGGTCAAGGAAGTTTCTCTGATGGTATGTCTTTAGGAATCTCTGGTACTTTCAA 130784 Query 166548 CTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGG 166607 || ||| |||| ||| | | ||||||||||||||| ||||| || || || ||| | || Sbjct 130783 CTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCACATGTTAGG 130724 Query 166608 TGTAGCAGGTGTA 166620 |||||| |||||| Sbjct 130723 TGTAGCTGGTGTA 130711 >seq7208 Length=13341 Score = 219 bits (242), Expect = 5e-52 Identities = 432/630 (69%), Gaps = 7/630 (1%) Strand=Plus/Plus Query 166075 ACCAACAACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCA 166134 ||||| || ||||||| | | |||||||| ||||||| || || | ||| | Sbjct 1698 ACCAAAAAT-GTCTTTACATCCGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT 1756 Query 166135 GCAACCATCTGT-TTCATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGAT 166193 |||||| ||||| || || |||| ||| | || || ||||| || ||||| ||||| || Sbjct 1757 GCAACC-TCTGTATTTATTATCGCCTTCATCGCAGCTCCTCCAGTAGATATTGATGGTAT 1815 Query 166194 CCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAA-CAACATCATCTCTGGTGCTGTTG 166252 | |||||| || || ||| |||| ||| | || ||| || ||||||||||| || Sbjct 1816 TCATGAGCCTGTTTTTGGTTCTTTAATTTATAGAAAACAATATTATCTCTGGTGCCATTA 1875 Query 166253 TCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTG 166312 | || | || || || | | || || || || | || ||||| |||| ||| Sbjct 1876 TTCCTTTTTCTGCAGCGATCAGATTGCATTTTTACCCACTTTGAGAAGCGGCATTTGTTG 1935 Query 166313 ATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCA 166372 |||||||| | || || |||||||||| |||| | || | |||||| | | || Sbjct 1936 ATGAATGGTTATACAATGGTGGTCCTTGTGAGCTAATTGTTCTACACTTCTTACTTGGTG 1995 Query 166373 TCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGA 166432 | | || |||||||||||||||||| | || | | |||| ||||||||||| Sbjct 1996 TAGCTTGTTATATGGGTCGTGAATGGGAACTTAGTTGATGTTTGGGTACGCGTCCTTGGA 2055 Query 166433 TTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTT 166492 || || | || || | ||||||||||| || | || | ||| | |||| ||| Sbjct 2056 TTGTTGTTTCCTATTCAACTCCTGTTGCAGCTGCTACAGCTATTTTCTTAATCTACCCTA 2115 Query 166493 TCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACA 166552 |||||||| ||| ||| | | ||| | | || ||| ||| || ||||||| | Sbjct 2116 CTGGTCAAGGAAGTTTTTCTAATGGTATGGCTTTAGGAATCTCTGGTACTTTCAACTTTA 2175 Query 166553 TGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAG 166612 || ||| ||||| ||| ||||||||||||| | ||| || || || || | ||||||| Sbjct 2176 TGGCTGTATTCCAGGCACAGCACAACATCCTTACGCATCCATTTCACATCTTAGGTGTAG 2235 Query 166613 CAGGTGTATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGC 166672 | ||||||||||| || || || ||| || ||||| | | || || | || | Sbjct 2236 CTGGTGTATTCGGCGGTTC-CTATTCAATGCTATGCATAGTTCCTTGGTAACCT-CTAGT 2293 Query 166673 TCG-TCCGTGAGACCACTGAAACTGAGTCT 166701 | | || | ||||||||||||||||| ||| Sbjct 2294 TTGCTCAGGGAGACCACTGAAACTGAATCT 2323 >seq2365 Length=77851 Score = 203 bits (224), Expect = 4e-47 Identities = 305/434 (70%), Gaps = 12/434 (3%) Strand=Plus/Plus Query 166180 GATATCGATGGGATCCGTGAGCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATC 166239 ||||| ||||| || | ||||| | || ||| || | ||||| ||||| || ||| Sbjct 13461 GATATTGATGGTATTCACGAGCCTATTTTTGGTTCTTTACTTTATGGAAACAATATTATC 13520 Query 166240 TCTGGTGCTGTTGTCCCCTCCTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAA 166299 |||||||| || | |||||| | |||| || || || || || |||| Sbjct 13521 TCTGGTGCCATTTT-------TCCAACTCGATTG-----CATTTTTACCCAATTCAGGAA 13568 Query 166300 GCAGCATCACTTGATGAATGGCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCAC 166359 || ||||| |||||||||||| | || || |||||||||| |||| | || | ||| Sbjct 13569 GCTGCATCTCTTGATGAATGGTTATACAATGGTGGTCCTTATGAGCTAATTGTTCTACAC 13628 Query 166360 TTCCTCATCGGCATCTATGCCTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGT 166419 ||| | | || | | || ||||||||||| |||||| | || | | || ||| Sbjct 13629 TTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAATTTCTGTCTGGGT 13688 Query 166420 ATGCGTCCTTGGATTTGCGTAGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTC 166479 |||| |||||||||| || ||| | || || |||||| |||| || | || || ||| Sbjct 13689 ATGCATCCTTGGATTGCTGTTGCAAATTCAGCTCCTGTTTCAGCTGCTACTGCTGTTTTC 13748 Query 166480 CTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGC 166539 || | || ||| | |||||||| ||||||||| | ||||| | || ||| ||| Sbjct 13749 TTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATCTCTGGT 13808 Query 166540 ACCTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCAT 166599 || ||||||| ||| |||| ||| | | ||||||||||||||| ||||| || || || Sbjct 13809 ACTTTCAACTTTATGATTGTATTCGAGGTAGAGCACAACATCCTTATGCATCCATTTCAC 13868 Query 166600 ATGCTGGGTGTAGC 166613 ||| | |||||||| Sbjct 13869 ATGTTAGGTGTAGC 13882 >seq160 Length=286096 Score = 163 bits (180), Expect = 3e-35 Identities = 163/211 (77%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 166762 GGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCTCGCTCGCTGCAC 166821 ||||| || ||||| | ||||||||||| ||| |||||||||||||| || | ||| Sbjct 255131 GGTTATTTTGGTCGATTAATCTTCCAATATGCTAGTTTCAACAACTCTCGTTCTTTACAC 255190 Query 166822 TTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACC 166881 ||||| || || |||||||| || || |||||||| |||||| | ||| |||| || Sbjct 255191 TTCTTG---GCTGCCTGGCCTGTAGTAGGGATCTGGTTCACTGCTTTAGGTATTAGTACT 255247 Query 166882 ATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGT 166941 |||||||||||||| || |||||||| |||||||| || | | ||| | || ||||| Sbjct 255248 ATGGCATTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGC 255307 Query 166942 GTGCTCAACACTTGGGCAGATGTCCTCAACC 166972 || | || |||||||| ||| || |||||| Sbjct 255308 GTTATTAATACTTGGGCTGATATCATCAACC 255338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567135506746400