Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Zoysia_20matrella_20[genbank_20GCA_5F001602295.1_202016-03-15] 13,609 sequences; 563,438,595 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq3171 96.9 4e-15 seq6625 93.3 5e-14 seq9036 91.5 2e-13 seq2508 91.5 2e-13 seq1057 91.5 2e-13 seq3630 89.7 6e-13 seq1143 89.7 6e-13 seq1424 87.8 2e-12 seq4858 86.0 7e-12 seq3626 86.0 7e-12 seq3237 86.0 7e-12 seq8090 84.2 2e-11 seq1866 84.2 2e-11 seq6769 82.4 8e-11 seq6435 82.4 8e-11 seq1607 82.4 8e-11 >seq3171 Length=56847 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/104 (82%), Gaps = 4/104 (4%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 25758 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 25817 Query 126324 TGGGTTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 ||||||| || ||||| ||||||| || || || |||||||| Sbjct 25818 TGGGTTCAAATCCCACTTCTGACAATTTTTTTTT--AATTTTTG 25859 >seq6625 Length=16722 Score = 93.3 bits (102), Expect = 5e-14 Identities = 88/110 (80%), Gaps = 7/110 (6%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 5176 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 5117 Query 126323 GTGGGTTCGAACCCCACACCTGA---CAAATTATTATTGGAATTTTTGTT 126369 |||||||| || ||||| |||| |||||| ||||| |||||| || Sbjct 5116 GTGGGTTCAAATCCCACTTCTGACATCAAATTTTTATT--TATTTTTATT 5069 >seq9036 Length=5451 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 4772 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 4831 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || ||||| ||||||||| Sbjct 4832 TGGGTTCAAATCCCACTTCTGACAAAT 4858 >seq2508 Length=70727 Score = 91.5 bits (100), Expect = 2e-13 Identities = 80/98 (82%), Gaps = 5/98 (5%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 64610 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 64669 Query 126323 GTGGGTTCGAACCCCACACCTGA---CAAATTATTATT 126357 |||||||| || ||||| |||| |||||| ||||| Sbjct 64670 GTGGGTTCAAATCCCACTTCTGACATCAAATTTTTATT 64707 >seq1057 Length=136283 Score = 91.5 bits (100), Expect = 2e-13 Identities = 73/87 (84%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 21761 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 21702 Query 126324 TGGGTTCGAACCCCACACCTGACAAAT 126350 ||||||| || ||||| ||||||||| Sbjct 21701 TGGGTTCAAATCCCACTTCTGACAAAT 21675 >seq3630 Length=47921 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 39305 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 39364 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 39365 TGGGTTCAAATCCCACTTCTGACAAA 39390 >seq1143 Length=128486 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 119876 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGCG 119935 Query 126324 TGGGTTCGAACCCCACACCTGACAAA 126349 ||||||| || ||||| |||||||| Sbjct 119936 TGGGTTCAAATCCCACTTCTGACAAA 119961 >seq1424 Length=110268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/85 (84%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 34983 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 34924 Query 126323 GTGGGTTCGAACCCCACACCTGACA 126347 |||||||| || ||||| |||||| Sbjct 34923 GTGGGTTCAAATCCCACTTCTGACA 34899 >seq4858 Length=32242 Score = 86.0 bits (94), Expect = 7e-12 Identities = 70/84 (83%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | ||| Sbjct 21104 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTGACGAGGGCG 21045 Query 126324 TGGGTTCGAACCCCACACCTGACA 126347 ||||||| || ||||| |||||| Sbjct 21044 TGGGTTCAAATCCCACTTCTGACA 21021 >seq3626 Length=47342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 27394 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 27337 Query 126328 TTCGAACCCCACACCTGACA-AATTATTATT 126357 ||| || |||||| ||| || |||| ||||| Sbjct 27336 TTCAAATCCCACAGCTGTCATAATTTTTATT 27306 >seq3237 Length=55304 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/91 (82%), Gaps = 3/91 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 18781 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 18838 Query 126328 TTCGAACCCCACACCTGACA-AATTATTATT 126357 ||| || |||||| ||| || |||| ||||| Sbjct 18839 TTCAAATCCCACAGCTGTCATAATTTTTATT 18869 >seq8090 Length=8639 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 3590 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3647 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 3648 GGGTTCAAATCCCACAGCTGTCAATTTTTT 3677 >seq1866 Length=92466 Score = 84.2 bits (92), Expect = 2e-11 Identities = 73/90 (81%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324 || ||| |||||||||||||||||||||||||||||| | |||||| || | |||| Sbjct 20235 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 20292 Query 126325 GGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||| || |||||| ||| ||| || || Sbjct 20293 GGGTTCAAATCCCACAGCTGTCAATTTTTT 20322 >seq6769 Length=15993 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 3296 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 3353 Query 126328 TTCGAACCCCACACCTGACAAATTATT 126354 ||| || |||||| ||| || | |||| Sbjct 3354 TTCAAATCCCACAGCTGTCATAATATT 3380 >seq6435 Length=18085 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2298 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2355 Query 126328 TTCGAACCCCACACCTGAC---AAATTATTATTGGAATTTTTG 126367 ||| || |||||| ||| | || || ||||| ||||||| Sbjct 2356 TTCAAATCCCACAGCTGTCACTAATTTTTTATTTTTATTTTTG 2398 >seq1607 Length=100801 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/103 (79%), Gaps = 5/103 (5%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2333 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2390 Query 126328 TTCGAACCCCACACCTGAC---AAATTATTATTGGAATTTTTG 126367 ||| || |||||| ||| | || || ||||| ||||||| Sbjct 2391 TTCAAATCCCACAGCTGTCACTAATTTTTTATTTTCATTTTTG 2433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556766071017160